WATANABE Nobuhisa

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Name
WATANABE Nobuhisa
E-mail
nobuhisanagoya-u.jp

Published Papers

 
Nakashima, M., Tsuzuki, S., Awazu, H., Hamano, A., Okada, A., Ode, H., Maejima, M., Hachiya, A., Yokomaku, Y., Watanabe, N., Akari, H. and Iwatani, Y.
J. Mol. Biol.   429(8) 1262-1276   Apr 2017   [Refereed]
Watanabe, N., Nagae, T., Yamada, Y., Tomita, A., Matsugaki, N. and Tabuchi, M.
J. Synchrotron Rad.   24(1) 338-343   Jan 2017   [Refereed]
Hamajima, Y., Nagae, T., Watanabe, N., Ohmae, E., Kato-Yamada, Y., and Kato, C.
Extremophiles   20(2) 177-186   Feb 2016   [Refereed]
Nakashima, M., Ode, H., Suzuki, K., Fujino, M., Maejima, M., Kimura, Y., Masaoka, T., Hattori, J., Matsuda, M., Hachiya, A., Yokomaku, Y., Suzuki, A., Watanabe, N., Sugiura W. and Iwatani, Y.
Front. Microbiol.   6 61   Jan 2016   [Refereed]
Nakashima, M., Ode, H., Kawamura, T., Kitamura, S., Naganawa, Y., Awazu, H., Tsuzuki, S., Matsuoka, K., Nemoto, M., Hachiya, A., Sugiura, W., Yokomaku, Y., Watanabe, N. and Iwatani, Y.
J. Virology   90(2) 1034-1047   Jan 2016   [Refereed]

Misc

 
Nakashima, M., Tsuzuki, S., Awazu, H., Hamano, A., Okada, A., Ode, H., Maejima, M., Hachiya, A., Yokomaku, Y., Watanabe, N., Akari, H. and Iwatani, Y.
J. Mol. Biol.   429(8) 1262-1276   Apr 2017   [Refereed]
Watanabe, N., Nagae, T., Yamada, Y., Tomita, A., Matsugaki, N. and Tabuchi, M.
J. Synchrotron Rad.   24(1) 338-343   Jan 2017   [Refereed]
Hamajima, Y., Nagae, T., Watanabe, N., Ohmae, E., Kato-Yamada, Y., and Kato, C.
Extremophiles   20(2) 177-186   Feb 2016   [Refereed]
Nakashima, M., Ode, H., Kawamura, T., Kitamura, S., Naganawa, Y., Awazu, H., Tsuzuki, S., Matsuoka, K., Nemoto, M., Hachiya, A., Sugiura, W., Yokomaku, Y., Watanabe, N. and Iwatani, Y.
J. Virology   90(2) 1034-1047   Jan 2016   [Refereed]
Nakashima, M., Ode, H., Suzuki, K., Fujino, M., Maejima, M., Kimura, Y., Masaoka, T., Hattori, J., Matsuda, M., Hachiya, A., Yokomaku, Y., Suzuki, A., Watanabe, N., Sugiura W. and Iwatani, Y.
Front. Microbiol.   6 61   Jan 2016   [Refereed]
Yamada, H., Nagae, T. and Watanabe, N.
Acta Cryst. section D   71(4) 742-753   Mar 2015   [Refereed]
Kawamura, T., Kobayashi, T. and Watanabe, N.
Acta Crystallographica, section D   71(2) 256-265   Feb 2015   [Refereed]
Pressure Effects of the Chimeric 3-Isopropylmalate Dehydrogenases of the Deep-Sea Piezophilic Shewanella benthica and the Atmospheric Pressure Adapted Shewanella oneidensis
Hamajima, Y., Nagae, T., Watanabe, N., Kato-Yamada, Y., Imai, T. and Kato, C.
Biosci. Biotech. Biochem.   78(3) 469-471   2014   [Refereed]
Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape
Hayashi, T., Tanaka, Y., Sakai, N., Watanabe, N., Tamura, T., Tanaka, I. and Yao, M.
Biochem. Biophys. Res. Commun.   435(1) 28-33   2013   [Refereed]
Kubota, T., Koiwai, O., Hori, K., Watanabe, N. and Koiwai, K.
PLOS ONE   8(7)    2013   [Refereed]
SCO4008, a putative TetR transcriptional repressor from Streptomyces coelicolor A3(2), regulates transcription of sco4007 by multidrug recognition
Hayashi, T., Tanaka, Y., Sakai, N., Okada, U., Yao, M., Watanabe, N., Tamura, T. and Tanaka, I.
J. Mol. Biol.   425(18) 3289-3300   2013   [Refereed]
New methodologies at PF AR-NW12A: implementation of high-pressure macromolecular crystallography
Chavas, LMG, Nagae, T., Yamada, H., Watanabe, N., Yamada, Y., Hiraki, M. and Matsugaki, N.
J. Synchrotron Rad.   20(6) 829-833   2013   [Refereed]
U-shape rotating anti-cathode compact X-ray generator:20 times stronger than the commercially available X-ray source
Sakabe, N., Sakabe, K., Ohsawa, S., Sakai, T., Kobayakawa, H., Sugimura, T., Ikeda, M., Tawada, M., Watanabe, N., Sasaki, K. and Wakatsuki, M.
J. Synchrotron Rad.   20(6) 829-842   2013   [Refereed]
Nagae, T., Kawamura, T., Chavas, LMG., Niwa, K., Hasegawa, M., Kato, C. and Watanabe, N.
Acta Cryst., D   68(3) 300-309   2012   [Refereed]
Goddard-Borger, ED., Sakaguchi, K., Reitinger, S., Watanabe, N., Ito, M. and Withers, SG.
J. Am. Chem. Soc.   134(8) 3895-3902   2012   [Refereed]
The crystal structure of APOBEC3C and the interface for HIV-1 Vif binding
Kitamura, S., Ode, H., Nakashima, M., Imahashi, M., Naganawa, Y., Kurosawa, T., Yokomaku, Y., Yamane, T., Watanabe, N., Suzuki, A., Sugiura, W. and Iwatani, Y.
Nature Structural & Molecular Biology   19 1005-1010   2012   [Refereed]
Fujihashi, M., Hiraki, M., Ueno, G., Baba, S., Murakami, H., Suzuki, M., Watanabe, N., Tanaka, I., Nakagawa, A., Wakatsuki, S., Yamamoto, M. and Miki, K.
J. Appl. Cryst.   45(6) 1156-1161   2012   [Refereed]
The structure of Physarum polycephalum hemagglutinin I suggests a minimal carbohydrate recognition domain of lectin fold
Kouno, T., Watanabe, N., Sakai, N., Nakamura, T., Nabeshima, Y., Morita, M., Mizuguchi, M., Aizawa, T., Demura, M., Imanaka, T., Tanaka, I. and Kawano, K.
J. Mol. Biol.   405(2) 560-569   2011   [Refereed]
Semi-automated protein crystal mounting device for the sulphur SAD method
Kitago, Y., Watanabe, N., and Tanaka, I.
J. Appl. Cryst.   43(2) 341-346   2010   [Refereed]
Use of longer-wavelength X-rays has advantages for the detection of small anomalous signals from light atoms, such as sulfur, in protein molecules. However, the accuracy of the measured diffraction data decreases at longer wavelengths because of t...
Crystal structures of the multidrug binding repressor Corynebacterium glutamicum CgmR in complex with inducers and with operator
Itou, H., Watanabe, N., Yao, M., Shirakihara, Y. and Tanaka, I.
J. Mol. Biol.   403(2) 174-184   2010   [Refereed]
Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNA(Gln) formation
Nureki, O., O'Donoghue, P., Watanabe, N., Ohmori, A., Oshikane, H., Araiso, Y., Sheppard, K., Söll, D. and Ishitani, R
Nucleic Acids Research   38(20) 7286-7297   2010   [Refereed]
Fully Automated Data Collection Using PAM and the Development of PAM/SPACE Reversible Cassettes
Hiraki, M., Watanabe, S., Chavas, LMG., Yamada, Y., Matsugaki, N., Igarashi, N., Wakatsuki, S., Fujihashi, M., Miki, K., Baba, S., Ueno, G., Yamamoto, M., Suzuki, M., Nakagawa, A., Watanabe, N. and Tanaka
AIP Conf. Proc.   1234 673-676   2010   [Refereed]
X-ray crystallography and structural stability of digestive lysozyme from cow stomach
Nonaka, Y., Akieda, D., Aizawa, T., Watanabe, N., Kamiya, M., Kumaki Y., Tanaka, I., Mizuguchi, M., Kikukawa T., Demura, M., and Kawano, K.
FEBS J.   276(8) 2192-2200   2009   [Refereed]
Structural basis of yeast Tim40/Mia40 as an oxidative translocater in the mitochondrial intermembrane space,
Kawano,S., Naoe,M., Momose,T., Terao,K., Nishikawa,S., Yamano,K., Watanabe, N. and Endo,T.
Proc. Natl. Acad. Sci. USA   106(34) 14403-14407   2009   [Refereed]
*Crystal structures of restriction endonuclease HindIII complex with its congante DNA and divalent cations
Watanabe, N., Takasaki, Y., Sato, C., Ando, S. and Tanaka, I.
Acta Cryst.   D65(12) 1326-1333   2009   [Refereed]
Structure of putative 4-amino-4-deoxychorismate lyase from Thermus thermophilus HB8
Padmanabhan, B., Bessho, Y., Ebihara, A., Antonyuk, S.V., Ellis, M.J., Strange, R.W., Kuramitsu, S., Watanabe, N., Hasnain, S.S. and Yokoyama, S.
Acta Cryst.   F65(12) 1234-1239   2009   [Refereed]
The pyridoxal 5'-phosphate-dependent enzyme 4-amino-4-deoxychorismate lyase converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate in one of the crucial steps in the folate-biosynthesis pathway. The primary structure of the hypothetica...
SAD phasing by OASIS at different resolutions down to 0.30 nm and below
Yao,D., Li, H., Chen, Q., Gu, Y., Zheng, C., Lin, Z., Fan, H., Watanabe, N. and Sha, B.
Chinese Physics   17(1) 1-9   2008   [Refereed]
Structural and functional analysis of the TetR-family transcriptional regulator SCO0332 from Streptomyces coelicolor
Okada,U., Kondo,K., Hayashi,T., Watanabe, N., Yao,M., Tamura,T. and Tanaka, I.
Acta Cryst.   D64(2) 198-205   2008   [Refereed]
Crystal structure of the PH1932 protein, a unique archaeal ArsR type winged-HTH transcription factor from Pyrococcus horikoshii OT3
Itou, H., Yao, M., Watanabe, N. and Tanaka, I.
Proteins: Structure, Function, and Bioinformatics   70(4) 1631-1634   2008   [Refereed]
A Helical String of Alternately Connected Two Three-helix Bundles for the 1.1-Megadalton Cell Wall-Associated Adhesion Protein Ebh from Staphylococcus aureus
Tanaka, Y., Sakamoto, S., Kudora, M., Goda, S., Gao, Y., Tsumoto, K., Hiragi, Y., Yao, M., Watanabe, N., Ohta, T. and Tanaka, I.
Structure   16(3) 488-496   2008   [Refereed]
Spontaneous Asparaginyl Deamidation of Canine Milk Lysozyme under Mild Conditions
Nonaka, Y., Aizawa, T., Akieda, D., Watanabe, M., Watanabe, N., Tanaka, I., Kamiya, M., Mizuguchi, M., Demura, M. and Kawano, K.
Proteins: Structure, Function, and Bioinformatics   72(1) 313-322   2008   [Refereed]
Highly bright X-ray generator using heat of fusion with a specially designed rotating anticathode
Sakabe,N., Ohsawa,S., Sugimura,T., Ikeda,M., Tawada,M., Watanabe,N., Sasaki,K., Ohshima,K., Wakatsuki,M. and Sakabe,K.
J. Synchrotron Rad.   15(3) 231-234   2008   [Refereed][Invited]
Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2)
Begum,P., Sakai,N., Hayashi,T., Gao,Y-G., Tamura,T., Watanabe, N., Yao,M. and Tanaka,I.
Protein & Peptide Letters   15(7) 709-712   2008   [Refereed]
Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third NEAT domain of IsdH from Staphylococcus aureus
Watanabe, M., Tanaka, Y., Suenaga, A., Kuroda, M., Yao, M., Watanabe, N., Arisaka, F., Ohta, T., Tanaka, I. and Tsumoto, K.
J. Biol. Chem.   283(42) 28649-28659   2008   [Refereed]
A Water Molecule Identified as a Substrate of Enzymatic Hydrolysis of Cellulose: A Statistical-Mechanics Study
Ikuta, Y., Karita, S., Kitago, Y., Watanabe, N and Hirata, F.
Chem. Phys. Lett.   465(4-6) 279-284   2008   [Refereed]
Structure of mannosyl-3-phosphoglycerate phosphatase from Pyrococcus horikoshii
Kawamura, T., Watanabe, N. and Tanaka, I.
Acta Cryst.   D64(12) 1267-1276   2008   [Refereed]
Structural and Functional Characterization of the LidR from Corynebacterium glutamicum: a Transcriptional Repressor Involved in L-Lactate and Sugar Utilization
Gao, Y., Suzuki, H., Itou, H., Zhou, Y., Tanaka, Y., Wachi, M., Watanabe, N,, Tanaka, I. and Yao, M.
Nucleic Acids Research   36(22) 7110-7123   2008   [Refereed]
Structural and Functional Analysis of a Glycoside Hydrolase Family 97 Enzyme from Bacteroides thetaiotaomicron
Kitamura, M., Okuyama, M., anzawa, F., Mori, H., Kitago, Y., Watanabe, N., Kimura, A., Tanaka, I. and Yao, M.
J. Biol. Chem.   283(52) 36328-36337   2008   [Refereed]
Molecular biochemistry of a xyloglucanase, Cel44A from Clostridium thermocellum unveiled by X-ray crystallography
Yu Kitago, Shuichi Karita, Nobuhisa Watanabe, Kazuo Sakka, and Isao Tanaka
MIE BIOFORUM 2008 Proceedings   331-340   2008   [Invited]
Structural and Mutational analyses of Drp35 from Staphylococcus aureus: a possible mechanism for its lactonase activity
Tanaka, Y., Morikawa, K., Ohki, Y., Yao, M., Tsumoto, K., Watanabe, N., Ohta, T. and Tanaka, I.
J. Biol. Chem.   282(8) 5770-5780   2007   [Refereed]
DNA Recognition Mechanism of the ONECUT Homeodomain of Transcription Factor HNF-6
Iyaguchi, D., Yao, M., Watanabe, N., Nishihira, J. and Tanaka, I.
Structure   15 75-83   2007   [Refereed]
Identification of Amyloidogenic Sequences in Laminin-1
Kasai, S., Urushibara, S., Hozumi, K., Yokoyama, F., Ichikawa, N., Kadoya, Y., Nishi, N., Watanabe, N., Yamada, Y. and Nomizu, M.
Biochemistry   46 3966-3974   2007   [Refereed]
Crystal structure analysis reveals a novel forkhead-associated domain of ESAT-6 secretion system C protein in Staphylococcus aureus
Tanaka, Y., Kuroda, M., Yasutake, Y., Yao, M., Tsumoto, K., Watanabe, N., Ohta, T. and Tanaka, I.
Proteins: Structure, Function, and Bioinformatics   69(3) 659-664   2007   [Refereed]
*Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum
Kitago,Y., Karita, S., Watanabe, N., Kamiya, M., Aizawa, T., Sakka, K. and Tanaka, I.
J. Biol. Chem.   282(49) 35703-35711   2007   [Refereed]
Crystallization and preliminary x-ray studies of the unliganded wild-type bovine thrombin
Iyaguchi, D., Yao, M., Watanabe, N., Tanaka, I. and Toyota, E.
Protein Pept. Lett.   14(9) 2007   2007   [Refereed]
Structural analysis of the trasncriptional regulator homolog protein from Pyrococcus horikoshii OT3
Okada, U., Sakai, N., Yao, M., Watanabe, N. and Tanaka, I.
Proteins: Structure, Function, and Bioinformatics   63(4) 1119-1122   2006   [Refereed]
Crystal Structure of A-type ATP synthase catalytic nucleotide-binding subunit A from Pyrococcus horikoshii reveals a novel domain related in the peripheral stalk
Maegawa, Y., Morita, H., Iyaguchi, D., Yao, M., Watanabe, N. and Tanaka, I.
Acta Cryst.   D62(5) 438-488   2006   [Refereed]
Case studies of dual-space fragment extension with protein SAD data
Yao, D., Huang, S., Wang, J., Gu, Y., Zheng, C., Fan, H., Watanabe, N. and Tanaka, I.
Acta Cryst.   D62(8) 883-890   2006   [Refereed]
*From phasing to structure refinement in-house: Cr/Cu dual wavelength system and an loopless free crystal mounting method
Acta Cryst.   D62(8) 891-896   2006   [Refereed]
Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins
Hiyama, T., Zhao, M., Kitago, Y., Yao, M., Sekine, S., Terada, T., Kuroishi, C., Liu, ZJ., Rose, JP., Kuramitsu, S., Shirouzu, M., Watanabe, N., Yokoyama, S., Tanaka, I., Wang, BC.
J. Struct. Funct. Genomics   7(3-4) 119-129   2006   [Refereed]
Crystallization and preliminary X-ray studies of the DNA-binding domain of hepatocyte nuclear factor-6alpha complexed with DNA
Iyaguchi, D., Yao, M., Watanabe, N., Nishihira, J. and Tanaka I.
Protein Pept. Lett.   13(5) 2006   2006   [Refereed]
Crystal structure of PH0010 from Pyrococcus Horikoshii, which has high homology to human AMMECR1 C-terminal region
Proteins: Structure, Function, and Bioinformatics   58 501-503   2005   [Refereed]
Modified Nextal crystallization device for in situ inspection of protein crystal quality
J. Appl. Cryst.   38 396-397   2005   [Refereed]
Comparison of phasing methods for sulfur-SAD using in-house chromium radiation: case studies for standard proteins and 69-kDa protein
Acta Cryst.   D61 1533-1540   2005   [Refereed]
The CGL2612 Protein from Corynebacterium glutamicum Is a Drug Resistance-Related Transcriptional Repressor: Structural and Functional Analysis of a Newly Identified Transcription Factor from Genomic DNA Analysis
Itou, H., Okada, U., Suzuki, H., Yao, M., Wachi, M., Watanabe, N. and Tanaka, I
J. Biol. Chem.   280(46) 38711-38719   2005   [Refereed]
*Structure determination of a novel protein by sulphur SAD using chromium radiation in combination with a new crystal mounting method
Acta Cryst.   D61 1013-1021   2005   [Refereed]
Crystal Structure of Conserved Protein PH1136 From Pyrococcus horikoshii
Proteins: Structure, Function, and Bioinformatics   55 210-213   2004   [Refereed]
Crystal Structure of Human p120 homologue PH1374 from Pyrococcus Horikoshii
Proteins: Structure, Function, and Bioinformatics   54 814-816   2004   [Refereed]
Structure analysis of PH1161 protein, a transcriptional activator TenA homologue from the hyperthermophilic archaeon Pyrococcus horikoshii
Acta Cryst.   D60 1094-1100   2004   [Refereed]
Crystallization and preliminary X-ray diffraction study of catalytic subunit of Archaeal H+-transporting ATPsynthase from Pyrococcus horikioshii OT3
Acta Cryst.   D60 1484-1486   2004   [Refereed]
Preparation and preliminary X-ray analysis of the catalitic module of beta-1,3-xylanase from the marine bacterium, Vibrio sp. strain AX-4
Acta Cryst.   D60 1470-1472   2004   [Refereed]
Structural and enzymatic insights into inerness of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J. Mol. Biol.   341 999-1013   2004   [Refereed]
Crystal structure of the ATP-binding cassette of multi-sugar transporter from Pyrococcus horikoshii OT3
Proteins: Structure, Function, and Bioinformatics   57 635-638   2004   [Refereed]
Crystal structure of hypothetical protein PH0828 from Pyrococcus Horikoshii
Proteins: Structure, Function, and Bioinformatics   57 862-865   2004   [Refereed]
Crystal structure of hypothetical protein PH0642 from Pyrococcus Horikoshii at 1.6A resolution
Proteins: Structure, Function, and Bioinformatics   57 869-873   2004   [Refereed]
Reaction Intermediate Structures of 1-Aminocyclopropane-a-carboxylate Deaminase
J. Biol. Chem.   278 41069-4107   2003   [Refereed]
The Crystal Structure of Human MRP14 (S100A9), a Ca2+-dependent Regulator Protein in Inflammatory Process
Journal of Molecular Biology   316 265   2002   [Refereed]
Ile-Lys-Val-Ala-Val (IKVAV)-contaminating laminin alpha chain peptides from amyloid-like fibrils
FEBS Letters   530 48   2002   [Refereed]
Semi-automatic protein crystallization system that allows in situ observation of X-ray diffraction from crystals in the drop
Acta Crystallographica section D   58 1527   2002   [Refereed]
The X-ray Crystal Structure of Pyrrolidone-Carboxylate Peptidase from Hyperthermophilic Archaea Pyrococcus horikoshii
Journal of Structural and Functional Genomics   2 145   2002   [Refereed]
Expression, purification, crystallization, and preliminary X-ray diffraction analysis of human calcium-binding protein MRP14(S100A9)
Acta Crystallographica, Section D   57 1174   2001   [Refereed]
The MinD protein from hyperthermophilic archaeon Pyrococcus horikoshii, crystallization and preliminary X-ray analysis
Acta Crystallographica, Section D   57 896   2001   [Refereed]
Very easy and cheap grease device for crystallization plates
Journal of Applied Crystallography   34 224   2001   [Refereed]
Automatic Weissenberg data collection system for time-resolved protein crystallography
Nuclear Instruments and Methods A   467-468 1367   2001   [Refereed]
The MinD protein from hyperthermophilic archaeon Pyrococcus horikoshii, crystallization and preliminary X-ray analysis
Acta Crystallographica, Section D   57 896   2001   [Refereed]
Expression, purification, crystallization, and preliminary X-ray diffraction analysis of human calcium-binding protein MRP14 (S100A9)
Acta Crystallographica section D   57 1174   2001   [Refereed]
The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP
Structure with folding design   9 817   2001   [Refereed]
*Rotated-inclined focusing monochromator with simultaneous tuning of asymmetry factor and radius of curvature over a wide wavelength range
Journal of Synchrotron Radiation   6(2) 64-68   1999   [Refereed]
Computer network system with security for a protein data collection system at the Photon Factory
Journal of Synchrotron Radiation   6 116   1999   [Refereed]
Time-resolved protein crystallography with larg-angle oscillations : an application of a protein data-collection system using the Weissenberg technique and a large-format imaging plate
Journal of Synchrotron Radiation   4 16   1997   [Refereed]
Large-format imaging plate and Weissenberg camera for accurate protein crystallographic data collection using Synchrotron Radiation
Journal of Synchrotron Radiation   4 136   1997   [Refereed]
Macromolecular crystallography station BL-18B at the Photon Factory
Review of Scientific Instruments   66(2) 1824   1995   [Refereed]
Weissenberg camera for macromolecules with imaging plate data collection system at the Photon Factory : Present status and future plan
Review of Scientific Instruments   66(2) 1276   1995   [Refereed][Invited]
Crystal Structure Analysis of omega-Amino Acid : Pyravate Aminotransferace with a Newly Developed Weissemberg Camera and an Imaging Plate Using Synchrotron Radiation
Journal of Biochemistry   105 1   1989   [Refereed]
Application of Transform Theory to Resonance CARS Excitation Profiles of a Cyanine Dye
Journal of Raman Spectrocopy   18 381   1987   [Refereed]

Books etc

 
High Pressure Macromolecular Crystallography (in Subcellular Biochemistry)
Watanabe, N.
Springer   Jan 2015