論文

査読有り
2018年3月

High sensitive RNA detection by one-step RT-PCR using the genetically engineered variant of DNA polymerase with reverse transcriptase activity from hyperthermophilies.

Journal of bioscience and bioengineering
  • Hiroyuki Okano
  • ,
  • Misato Baba
  • ,
  • Katsuhiro Kawato
  • ,
  • Ryota Hidese
  • ,
  • Itaru Yanagihara
  • ,
  • Kenji Kojima
  • ,
  • Teisuke Takita
  • ,
  • Shinsuke Fujiwara
  • ,
  • Kiyoshi Yasukawa

125
3
開始ページ
275
終了ページ
281
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1016/j.jbiosc.2017.10.004

One-step RT-PCR has not been widely used even though some thermostable DNA polymerases with reverse transcriptase (RT) activity were developed from bacterial and archaeal polymerases, which is owing to low cDNA synthesis activity from RNA. In the present study, we developed highly-sensitive one-step RT-PCR using the single variant of family A DNA polymerase with RT activity, K4polL329A (L329A), from the hyperthermophilic bacterium Thermotoga petrophila K4 or the 16-tuple variant of family B DNA polymerase with RT activity, RTX, from the hyperthermophilic archaeon Thermococcus kodakarensis. Optimization of reaction condition revealed that the activities for cDNA synthesis and PCR of K4polL329A and RTX were highly affected by the concentrations of MgCl2 and Mn(OCOCH3)2 as well as those of K4polL329A or RTX. Under the optimized condition, 300 copies/μl of target RNA in 10 μl reaction volumes were successfully detected by the one-step RT-PCR with K4polL329A or RTX, which was almost equally sensitive enough compared with the current RT-PCR condition using retroviral RT and thermostable DNA polymerase. Considering that K4polL329A and RTX are stable even at 90-100°C, our results suggest that the one-step RT-PCR with K4polL329A or RTX is more advantageous than the current one.

リンク情報
DOI
https://doi.org/10.1016/j.jbiosc.2017.10.004
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/29100684
ID情報
  • DOI : 10.1016/j.jbiosc.2017.10.004
  • PubMed ID : 29100684

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