論文

査読有り
2008年5月

Free-energy analysis of the molecular binding into lipid membrane with the method of energy representation

JOURNAL OF CHEMICAL PHYSICS
  • Nobuyuki Matubayasi
  • ,
  • Wataru Shinoda
  • ,
  • Masaru Nakahara

128
19
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1063/1.2919117
出版者・発行元
AMER INST PHYSICS

A statistical-mechanical treatment of the molecular binding into lipid membrane is presented in combination with molecular simulation. The membrane solution is viewed as an inhomogeneous, mixed solvent system, and the free energy of solvation of a solute in membrane is computed with a realistic set of potential functions by the method of energy representation. Carbon monoxide, carbon dioxide, benzene, and ethylbenzene are adopted as model solutes to analyze the binding into 1,2-dimyristoyl-sn-glycero-3-phosphatidylcholine (DMPC) membrane. It is shown that the membrane inside is more favorable than bulk water and that the solute distribution is diffuse throughout the membrane inside. The membrane-water partition coefficient is then constructed with the help of the Kirkwood-Buff theory from the solvation free energy obtained separately in the hydrophobic, glycerol, headgroup, and aqueous regions. To discuss the role of repulsive and attractive interactions, the solvation free energy is partitioned into the DMPC and water contributions and the effect of water to stabilize the benzene and ethylbenzene solutes within the membrane is pointed out. (c) 2008 American Institute of Physics.

リンク情報
DOI
https://doi.org/10.1063/1.2919117
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000256205200060&DestApp=WOS_CPL
URL
http://www.scopus.com/inward/record.url?eid=2-s2.0-44349122912&partnerID=MN8TOARS
URL
http://orcid.org/0000-0002-3388-9227
ID情報
  • DOI : 10.1063/1.2919117
  • ISSN : 0021-9606
  • ORCIDのPut Code : 35078591
  • SCOPUS ID : 44349122912
  • Web of Science ID : WOS:000256205200060

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