論文

査読有り 国際誌
2016年2月26日

Epigenetic alteration to activate Bmp2-Smad signaling in Raf-induced senescence.

World journal of biological chemistry
  • Mai Fujimoto
  • ,
  • Yasunobu Mano
  • ,
  • Motonobu Anai
  • ,
  • Shogo Yamamoto
  • ,
  • Masaki Fukuyo
  • ,
  • Hiroyuki Aburatani
  • ,
  • Atsushi Kaneda

7
1
開始ページ
188
終了ページ
205
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.4331/wjbc.v7.i1.188

AIM: To investigate epigenomic and gene expression alterations during cellular senescence induced by oncogenic Raf. METHODS: Cellular senescence was induced into mouse embryonic fibroblasts (MEFs) by infecting retrovirus to express oncogenic Raf (RafV600E). RNA was collected from RafV600E cells as well as MEFs without infection and MEFs with mock infection, and a genome-wide gene expression analysis was performed using microarray. The epigenomic status for active H3K4me3 and repressive H3K27me3 histone marks was analyzed by chromatin immunoprecipitation-sequencing for RafV600E cells on day 7 and for MEFs without infection. These data for Raf-induced senescence were compared with data for Ras-induced senescence that were obtained in our previous study. Gene knockdown and overexpression were done by retrovirus infection. RESULTS: Although the expression of some genes including secreted factors was specifically altered in either Ras- or Raf-induced senescence, many genes showed similar alteration pattern in Raf- and Ras-induced senescence. A total of 841 commonly upregulated 841 genes and 573 commonly downregulated genes showed a significant enrichment of genes related to signal and secreted proteins, suggesting the importance of alterations in secreted factors. Bmp2, a secreted protein to activate Bmp2-Smad signaling, was highly upregulated with gain of H3K4me3 and loss of H3K27me3 during Raf-induced senescence, as previously detected in Ras-induced senescence, and the knockdown of Bmp2 by shRNA lead to escape from Raf-induced senescence. Bmp2-Smad inhibitor Smad6 was strongly repressed with H3K4me3 loss in Raf-induced senescence, as detected in Ras-induced senescence, and senescence was also bypassed by Smad6 induction in Raf-activated cells. Different from Ras-induced senescence, however, gain of H3K27me3 did not occur in the Smad6 promoter region during Raf-induced senescence. When comparing genome-wide alteration between Ras- and Raf-induced senescence, genes showing loss of H3K27me3 during senescence significantly overlapped; genes showing H3K4me3 gain, or those showing H3K4me3 loss, also well-overlapped between Ras- and Raf-induced senescence. However, genes with gain of H3K27me3 overlapped significantly rarely, compared with those with H3K27me3 loss, with H3K4me3 gain, or with H3K4me3 loss. CONCLUSION: Although epigenetic alterations are partly different, Bmp2 upregulation and Smad6 repression occur and contribute to Raf-induced senescence, as detected in Ras-induced senescence.

リンク情報
DOI
https://doi.org/10.4331/wjbc.v7.i1.188
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/26981207
PubMed Central
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4768123
ID情報
  • DOI : 10.4331/wjbc.v7.i1.188
  • PubMed ID : 26981207
  • PubMed Central 記事ID : PMC4768123

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