原田 隆平

Phosphorylation on the Accessory Domain of Yeast Histone Chaperone yNap1 Exposes the Nuclear Export Sequence 

Proteins, in preparation 2021年3月  査読有り

Post-string Method: Estimation of Minimal Free Energy Path 

Journal of Chemical Information and Modeling, under review (Manuscript ID ci-2021-001189) 2021年3月  査読有り

Independent Non-targeted Parallel Cascade Selection Molecular Dynamics for Enhancing Conformational Transitions of Proteins 

Journal of Chemical Theory and Computation, in preparation 2021年3月  査読有り

Comprehensive Predictions of Secondary Structures for Comparative Analysis in Different Species 

Journal of Structural Biology, in revision (Manuscript ID: JSB-20-257) 2021年3月  査読有り

pyProGA - A PyMOL Plugin for Protein Residue Network Analysis 

Bioinformatics, submitted (Manuscript ID: BIOINF-2021-0368) 2021年2月

Membrane Permeability Evaluated from Solvation Free Energy Calculation of Cyclic Dipeptide 

Journal of Computer Chemistry Japan, accepted 2021年1月  査読有り  招待有り

Rare Event Sampling of Proteins Based on Distributed Molecular Dynamics Simulations 

Japan Society of Theoretical Chemistry, accepted 2021年1月  査読有り  招待有り

The Folding of Trp-cage is Regulated by Stochastic Flip of the Sidechain of Tryptophan 

Chemistry Letters 50(1) 162 - 165 2021年1月  査読有り

Rearrangements of Water Molecules in Parallel Cascade Selection Molecular Dynamics Enhance Structural Explorations 

Bulletin Chemical Society of Japan 94 97 - 105 2021年1月  査読有り

Enhanced Conformational Sampling Method Based on Anomaly Detection Parallel Cascade Selection Molecular Dynamics: ad-PaCS-MD 

Journal of Chemical Theory and Computation 16(10) 6716 - 6725 2020年10月  査読有り

The Molecular Mechanism on the Actin-Binding Domain of the Alpha-Actinin Ain1 Elucidated by Molecular Dynamics Simulations and Mutagenesis Experiments 

The Journal of Physical Chemistry B 124(39) 8495 - 8503 2020年10月  査読有り

カスケード選択型分子動力学シミュレーションで実現する環状ペプチドの膜透過シミュレーション 

スーパーコンピューティングニュース 特集号 22(1) 13 - 18 2020年8月  査読有り  招待有り

Efficient Conformational Sampling of Collective Motions of Proteins with Principal Component Analysis Based Parallel Cascade Selection Molecular Dynamics 

Journal of Chemical Information and Modeling 60(8) 4021 - 4029 2020年8月  査読有り

The Dynamics of S-adenosyl-methionine and S-adenosyl-homo-cysteine in Mouse Dnmt1 is Driven from their Structural Flexibilities 

Chemistry Letters 49(7) 785 - 788 2020年7月  査読有り

Regenerations of Initial Velocities in Parallel Cascade Selection Molecular Dynamics (PaCS-MD) Enhance the Conformational Transitions of Proteins 

Chemistry Letters 49(7) 798 - 801 2020年7月  査読有り

Distribution of Counter Ions in Negatively-charged Lipid/Water/Air Interface: Molecular Dynamics Study 

Chemistry Letters 49(4) 361 - 363 2020年4月  査読有り

Protein Dynamics and the Folding Degree 

Journal of Chemical Information and Modeling 60(3) 1559 - 1567 2020年3月  査読有り

学術賞受賞寄稿「タンパク質の機能発現に重要なレアイベントを抽出するサンプリング手法の開発」 

アンサンブル 22 1 - 6 2020年1月  査読有り  招待有り

Rare Event Sampling of Biomolecules Based on Distributed Computing 

BUTSURI 75(1) 28 - 33 2020年1月  査読有り  招待有り

Developments of Rare Event Sampling Methods for Proteins 

Journal of Computational Chemistry Japan 18(5) 199 - 201 2019年12月  査読有り  招待有り