論文

査読有り
2015年3月

GlycoRDF: an ontology to standardize glycomics data in RDF

BIOINFORMATICS
  • Rene Ranzinger
  • Kiyoko F. Aoki-Kinoshita
  • Matthew P. Campbell
  • Shin Kawano
  • Thomas Luetteke
  • Shujiro Okuda
  • Daisuke Shinmachi
  • Toshihide Shikanai
  • Hiromichi Sawaki
  • Philip Toukach
  • Masaaki Matsubara
  • Issaku Yamada
  • Hisashi Narimatsu
  • 全て表示

31
6
開始ページ
919
終了ページ
925
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1093/bioinformatics/btu732
出版者・発行元
OXFORD UNIV PRESS

Motivation: Over the last decades several glycomics-based bioinformatics resources and databases have been created and released to the public. Unfortunately, there is no common standard in the representation of the stored information or a common machine-readable interface allowing bioinformatics groups to easily extract and cross-reference the stored information.Results: An international group of bioinformatics experts in the field of glycomics have worked together to create a standard Resource Description Framework (RDF) representation for glycomics data, focused on glycan sequences and related biological source, publications and experimental data. This RDF standard is defined by the GlycoRDF ontology and will be used by database providers to generate common machine-readable exports of the data stored in their databases.

リンク情報
DOI
https://doi.org/10.1093/bioinformatics/btu732
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/25388145
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000352268900016&DestApp=WOS_CPL
URL
http://europepmc.org/abstract/med/25388145
URL
http://orcid.org/0000-0002-7969-2972
ID情報
  • DOI : 10.1093/bioinformatics/btu732
  • ISSN : 1367-4803
  • eISSN : 1460-2059
  • ORCIDのPut Code : 16651472
  • PubMed ID : 25388145
  • Web of Science ID : WOS:000352268900016

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