Soichiro Nagano

Profile Information

Affiliation: 主任研究員, 育種部育種第一課基盤技術研究室, 国立研究開発法人森林研究・整備機構森林総合研究所林木育種センター

Degree: 博士（生命科学）(Sep, 2011, 東北大学)

J-GLOBAL ID: 201801005841936450
researchmap Member ID: B000296691

External link: https://www.ffpri.affrc.go.jp/ftbc/

【研究テーマ】環境ストレスに対する植物の適応、ゲノムの複雑性と表現型の関係性、有用植物のゲノム・遺伝学的解析
【参画する主な研究課題】林木の分子育種

Research Interests

Research Areas

Research History

Oct, 2017 - Present

Senior Research Fellow, Forest Tree Breeding Center, Forestry and Forest Products Research Institute, Forest Research and Management Organization
May, 2017 - Sep, 2017

Postdoctoral Research Fellow, College of Agriculture, The department of advanced foods agriculture, Tamagawa University
Feb, 2015 - Sep, 2017

Postdoctoral Research Fellow, Department of Frontier Research, Kazusa DNA Research Institute
Oct, 2011 - Jan, 2015

Postdoctoral Research Fellow, Graduate School of Life Sciences, Tohoku University

Committee Memberships

May, 2019 - May, 2021

Superintendent, The Japanese Forest Society (JFS)

Papers

Efficient selection of a biallelic and nonchimeric gene-edited tree using Oxford Nanopore Technologies sequencing

Ryosuke Sato, Yoshihiko Nanasato, Naoki Takata, Soichiro Nagano, Eitaro Fukatsu, Takeshi Fujino, Katushi Yamaguchi, Yoshinari Moriguchi, Shuji Shigenobu, Yutaka Suzuki …

Tree Physiology, Dec 25, 2023
Haploid-resolved and chromosome-scale genome assembly in hexa-autoploid sweetpotato (Ipomoea batatas(L.) Lam)

Ung-Han Yoon, Qinghe Cao, Kenta Shirasawa, Hong Zhai, Tae-Ho Lee, Masaru Tanaka, Hideki Hirakawa, Jang-Ho Hahn, Xiangfeng Wang, Ho Soo Kim …

育種学研究, 25, Dec 25, 2022
Haplotype-resolved de novo genome assemblies of four coniferous tree species

Kenta Shirasawa, Kentaro Mishima, Hideki Hirakawa, Tomonori Hirao, Miyoko Tsubomura, Soichiro Nagano, Taiichi Iki, Sachiko Isobe, Makoto Takahashi

Nov 17, 2022
Rerouting of the lignin biosynthetic pathway by inhibition of cytosolic shikimate recycling in transgenic hybrid aspen.

Shi Hu, Naofumi Kamimura, Shingo Sakamoto, Soichiro Nagano, Naoki Takata, Sarah Liu, Geert Goeminne, Ruben Vanholme, Mikiko Uesugi, Masanobu Yamamoto …

The Plant journal, 110(2) 358-376, Apr, 2022 Peer-reviewed
Effect of differences in light source environment on transcriptome of leaf lettuce (Lactuca sativa L.) to optimize cultivation conditions.

Soichiro Nagano, Naoya Mori, Yukiko Tomari, Noriko Mitsugi, Ayumi Deguchi, Makoto Kashima, Ayumi Tezuka, Atsushi J Nagano, Hitohide Usami, Takanari Tanabata …

PloS one, 17(3) e0265994, 2022 Peer-reviewed
Prior secondary cell wall formation is required for gelatinous layer deposition and posture control in gravi-stimulated aspen.

Naoki Takata, Taku Tsuyama, Soichiro Nagano, Kei'ichi Baba, Yuko Yasuda, Shingo Sakamoto, Nobutaka Mitsuda, Toru Taniguchi

The Plant Journal, 108(3) 725-736, Aug 15, 2021 Peer-reviewed
Intraspecific variations in leaf traits, productivity and resource use efficiencies in the dominant species of subalpine evergreen coniferous and deciduous broad‐leaved forests along the altitudinal gradient

Kouki Hikosaka, Hiroko Kurokawa, Takahisa Arai, Sakino Takayanagi, Hiroshi O. Tanaka, Soichiro Nagano, Tohru Nakashizuka

Journal of Ecology, 109(4) 1804-1818, Apr, 2021 Peer-reviewed
Overexpression of Plasma Membrane H+-ATPase in Guard Cells Enhances Light-Induced Stomatal Opening, Photosynthesis, and Plant Growth in Hybrid Aspen.

Shigeo Toh, Naoki Takata, Eigo Ando, Yosuke Toda, Yin Wang, Yuki Hayashi, Nobutaka Mitsuda, Soichiro Nagano, Toru Taniguchi, Toshinori Kinoshita

Frontiers in plant science, 12 766037-766037, 2021
The latitudinal and altitudinal variations in the biochemical mechanisms of temperature dependence of photosynthesis within Fallopia japonica

Satoshi Machino, Soichiro Nagano, Kouki Hikosaka

Environmental and Experimental Botany, 181, Jan, 2021 Peer-reviewed
A Chromosome-scale draft genome sequence of horsegram (Macrotyloma uniflorum)

Sachiko Isobe, Kenta Shirasawa, Rakesh Chahota, Hideki Hirakawa, Soichiro Nagano, Hideki Nagasaki, Tilak Sharma

GigaByte Journal, 2021 Peer-reviewed
Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus

Chiaki Hori, Naoki Takata, Pui Ying Lam, Yuki Tobimatsu, Soichiro Nagano, Jenny C. Mortimer, Dan Cullen

Scientific Reports, 10(22043) 1-13, Dec, 2020 Peer-reviewed
SNP genotyping with target amplicon sequencing using a multiplexed primer panel and its application to genomic prediction in Japanese cedar, Cryptomeria japonica (L.f.) D.Don

Soichiro Nagano, Tomonori Hirao, Yuya Takashima, Michinari Matsushita, Kentaro Mishima, Makoto Takahashi, Taiichi Iki, Futoshi Ishiguri, Yuichiro Hiraoka

Forests, 11(9) 898-898, Aug 19, 2020 Peer-reviewedInvitedLead authorCorresponding author
RNA-seq analysis of meristem cells identifies the FaFT3 gene as a common floral inducer in Japanese cultivated strawberry

Koembuoy, K, Hasegawa, S, Otagaki, S, Takahashi, H, Nagano, S, Isobe, S, Shiratake, K, Matsumoto, S

The Horticulture Journal, 89(2) 138-146, Feb, 2020 Peer-reviewed
Genome-wide association study of strawberry fruit quality-related traits using a MAGIC population derived from crosses involving six strawberry cultivars

Takuya Wada, Masao Tsubone, Miyuki Mori, Chiharu Hirata, Shiro Nagamatsu, Koichiro Oku, Soichiro Nagano, Sachiko Isobe, Hideyuki Suzuki, Katsumi Shimomura …

The Horticulture Journal, 89(5) 553-566, 2020 Peer-reviewed
De novo whole-genome assembly in Chrysanthemum seticuspe, a model species of Chrysanthemums, and its application to genetic and gene discovery analysis.

Hideki Hirakawa, Katsuhiko Sumitomo, Tamotsu Hisamatsu, Soichiro Nagano, Kenta Shirasawa, Yohei Higuchi, Makoto Kusaba, Masaji Koshioka, Yoshihiro Nakano, Masafumi Yagi …

DNA research : an international journal for rapid publication of reports on genes and genomes, 26(3) 195-203, Jun 1, 2019 Peer-reviewed
Expression and functional analyses of five B-class genes in grape hyacinth (Muscari armeniacum)

Miura, K, Nakada, M, Kubota, S, Sato, S, Nagano, S, Kobayashi, A, Teranishi, M, Nakano, M, Kanno, A

The Horticulture Journal, 88(2) 284-292, Apr, 2019 Peer-reviewed
Plasticity of functional traits and optimality of biomass allocation in elevational ecotypes of Arabidopsis halleri grown at different soil nutrient availabilities.

Qing-Wei Wang, Maya Daumal, Soichiro Nagano, Naofumi Yoshida, Shin-Ichi Morinaga, Kouki Hikosaka

Journal of Plant Research, 132(2) 237-249, Mar, 2019 Peer-reviewed
Challenge to genomic selection in strawberry at four breeding stations in Japan

Nagano, S, Shirasawa, K, Maeda, F, Watanabe, M, Noguchi, Y, Kataoka, S, Wada, T, Oku, K, Mori, M, Tasaki, K …

Acta Horticulturae, 1203 1-8, Jun, 2018 Peer-reviewed
A system for distinguishing octoploid strawberry cultivars using high-throughput SNP genotyping

Hee-Jeong Jung, Karpagam Veerappan, Sathishkumar Natarajan, Namhee Jeong, Indeok Hwang, Soichiro Nagano, Kenta Shirasawa, Sachiko Isobe, Ill-Sup Nou

Tropical Plant Biology, 10(2-3) 68-76, Sep, 2017 Peer-reviewed
Development and characterization of a strawberry MAGIC population derived from crosses with six strawberry cultivars

Takuya Wada, Koichiro Oku, Soichiro Nagano, Sachiko Isobe, Hideyuki Suzuki, Miyuki Mori, Kinuko Takata, Chiharu Hirata, Katsumi Shimomura, Masao Tsubone …

Breeding Science, 67(4) 370-381, Sep, 2017 Peer-reviewed

Books and Other Publications

Forestry Improvement Extension Book Series No.205 Elite Trees Supporting New Forestry -A History of Forest Tree Breeding- (in Japanese)

Jan 31, 2024 (ISBN: 4881384570)
The Genomes of Rosaceous Berries and Their Wild Relatives

Isobe, N.-S, Shirasawa, K, Nagano, S, Hirakawa, H (Role: Contributor, Current status of octopoid strawberry (Fragaria × ananassa) genome study)

Springer International Publishing, Apr, 2018

Misc.

ロングリード技術による針葉樹4種の全ゲノム解読

白澤健太, 三嶋賢太郎, 平川英樹, 平尾知士, 坪村美代子, 永野聡一郎, 井城泰一, 磯部祥子, 高橋誠

日本森林学会大会学術講演集, 134th, 2023
発現遺伝子からみたスギ系統の乾燥ストレスに対する応答の違い

能勢美峰, 永野聡一郎, 高島有哉, 松下通也, 平尾知士

森林研究・整備機構森林総合研究所公開講演会(CD-ROM), 2022, 2022
カラマツ着花変異系統を用いた着花に関わる原因遺伝子座の探索

三嶋賢太郎, 井城泰一, 平川英樹, 白澤健太, 福田陽子, 福田有樹, 宮本尚子, 平尾知士, 永野聡一郎, 平岡裕一郎 …

日本森林学会大会学術講演集, 133rd, 2022
乾燥した生育環境への適応性を評価するスギの遺伝子発現マーカーの開発

能勢美峰, 永野聡一郎, 高島有哉, 平尾知士, 松下通也, 平岡裕一郎

森林総合研究所研究成果選集, 2021, 2021
Genome-Wide Association Study for Fruit Skin Color Using Everbearing Strawberry MAGIC Population

(81) 53-65, Mar, 2020
Effect of EGGS Analysis for MAGIC Population of Everbearing Strawberry on Increasing Fruit Firmness

(81) 37-52, Mar, 2020
An exploration of genes related with abnormal stamen in cultivated strawberry with considering for the pedigree information

永野聡一郎, 野口裕司, 平川英樹, 磯部祥子

園芸学研究別冊, 19(1), 2020
Comparison in differentially expressed genes of Cryptomeria japonica under high-temperature environmental condition

Nagano Soichiro, Nose Mine, Takashima Yuuya, Matsushita Michinari, Mishima Kentaro, Hirao Tomonori

The Japanese Forest Society Congress, 131 741-741, 2020
Evaluation of high-temperature stress tolerance in Cryptomeria japonica

Takashima Yuya, Nose Mine, Nagano Soichiro, Matsushita Michinari, Hirao Tomonori, Mishima Kentaro, Hiraoka Yuichiro, Takahashi Makoto

The Japanese Forest Society Congress, 131 146-146, 2020
Catalogizing the genotypes of the male sterile resources in Cryptomeria japonica

Tsubomura Miyoko, Hata Shoko, Saito Hiroshi, Banba Yukiko, Ito Yukiko, Saito Maki, Hakamata Tetsuji, Takahashi Makoto, Mishima Kentaro, Hirao Tomonori …

The Japanese Forest Society Congress, 131 756-756, 2020
キク二倍体近縁野生種キクタニギクの全ゲノムの塩基配列の解読

住友克彦, 平川英樹, 久松完, 永野聡一郎, 白澤健太, 樋口洋平, 草場信, 腰岡政二, 中野善公, 八木雅史 …

農研機構野菜花き研究部門成果情報(Web), 2019, 2019
遺伝子発現プロファイルからみたスギの乾燥応答の種内変異

能勢美峰, 高島有哉, 永野聡一郎, 松下通也, 平岡裕一郎, 平尾知士

育種学研究, 21, 2019
針葉樹林と落葉樹林優占種の標高傾度に沿った葉形質,生産力,資源利用効率の種内変異

彦坂幸毅, 黒川紘子, 新井孝尚, 高柳咲乃, 田中洋, 永野聡一郎, 中静透

日本生態学会大会講演要旨(Web), 66th, 2019
輸送適性に関わるイチゴ果実硬度に対するEGGS法による改良効果

永松志朗, 坪根正雄, 奥幸一郎, 永野聡一郎, 永野聡一郎, 中谷明弘, 磯部祥子, 森美幸, 平田千春, 佐伯由美 …

育種学研究, 21, 2019
栽培イチゴ雄蕊形態異常系統に特異的なゲノム配列の抽出

永野聡一郎, 野口裕司, 平川英樹, 磯部祥子

園芸学研究別冊, 18(1), 2019
四季成りイチゴMAGIC集団におけるEGGS解析を用いた果実硬度上昇効果

田崎公久, 飯村一成, 鈴木恵美子, 鈴木恵美子, 永野聡一郎, 永野聡一郎, 中谷明弘, 植木正明, 大橋幸雄, 大橋幸雄 …

園芸学研究別冊, 18(2), 2019
雄花着花量の異なるスギクローンのジベレリン処理後の遺伝子発現解析

坪村美代子, 三嶋賢太郎, 平尾知士, 永野聡一郎, 平川英樹

日本森林学会大会学術講演集, 130th, 2019
Genomic prediction model for growth and wood-property traits in intercrossed pedigrees of Cryptomeria japonica

Nagano Soichiro, Hiraoka Yuichiro, Hirao Tomonori, Mishima Kentaro, Iki Taiichi, Takashima Yuya, Ishiguri Futoshi, Takahashi Makoto

The Japanese Forest Society Congress, 130 597-597, 2019
20190725

永野聡一郎, 三嶋賢太郎, 平尾知士

Forest Genetics and Tree Breeding, 8(3) 149-151, 2019
キク属モデル植物・キクタニギク(Chrysanthemum seticuspe)の全ゲノム解析

平川英樹, 住友克彦, 久松完, 永野聡一郎, 永野聡一郎, 白澤健太, 樋口洋平, 草場信, 腰岡政二, 中野善公 …

育種学研究, 20 18, Sep 22, 2018

Awards

Mar, 2018

The paper award in Breeding Science, Japanese Society of Breeding

Takuya Wada, Koichiro Oku, Soichiro Nagano, Sachiko Isobe, Hideyuki Suzuki, Miyuki Mori, Kinuko Takata, Chiharu Hirata, Katsumi Shimomura, Masao Tsubone, Takao Katayama, Keita Hirashima, Yosuke Uchimura, Hidetoshi Ikegami, Takayuki Sueyoshi, Ko-ichi Obu
Sep, 2010

The Excellent Poster Awards, The 4th EAFES

Nagano, S, Saito, K, Morinaga, S.-I, Hidema, J, Hikosaka, K
Mar, 2008

The Best Poster Award, Ecological Society of Japan

Presentations

Catalogizing the genotypes of the male sterile resources in Cryptomeria japonica

Tsubomura Miyoko, Hata Shoko, Saito Hiroshi, Banba Yukiko, Ito Yukiko, Saito Maki, Hakamata Tetsuji, Takahashi Makoto, Mishima Kentaro, Hirao Tomonori, Nagano Soichiro, Hiraoka Yuichiro, Tanaka Koji, Watanabe Koichi, Miyuki Yurika, Nakamura Kenichi

The Japanese Forest Society Congress, 2020, THE JAPANESE FORESTRY SOCIETY
Evaluation of high-temperature stress tolerance in Cryptomeria japonica

Takashima Yuya, Nose Mine, Nagano Soichiro, Matsushita Michinari, Hirao Tomonori, Mishima Kentaro, Hiraoka Yuichiro, Takahashi Makoto

The Japanese Forest Society Congress, 2020, THE JAPANESE FORESTRY SOCIETY
Comparison in differentially expressed genes of Cryptomeria japonica under high-temperature environmental condition

Nagano Soichiro, Nose Mine, Takashima Yuuya, Matsushita Michinari, Mishima Kentaro, Hirao Tomonori

The Japanese Forest Society Congress, 2020, THE JAPANESE FORESTRY SOCIETY
Evaluation of growth and leaf senescence under red and blue LEDs conditions in leaf lettuce (1200-031)

Naoya Mori, Soichiro Nagano, Yukiko Tomari, Tomoko Mitsugi, Atsushi-J. Nagano, Hirohito Usami, Takanari Tanabata, Hiroyuki Watanabe

PlantBiology2018, Jul 14, 2018
林木の分子育種に向けたマルチプレックスSNPタイピングシステムの構築

永野聡一郎, 平尾知士, 三嶋賢太郎, 平岡裕一郎

日本森林学会大会学術講演集, Mar 26, 2018
イチゴの多元交雑集団を用いた果実色に関するゲノムワイド関連解析

坪根正雄, 和田卓也, 磯部祥子, 永野聡一郎, 永野聡一郎, 森美幸, 平田千春, 永松志朗, 下村克己, 平島敬太

育種学研究, Mar 25, 2018
イチゴ雄蕊形態異常に対する稔性(形態)回復遺伝子の確認

野口裕司, 片岡園, 永野聡一郎, 永野聡一郎

園芸学研究別冊, Mar 24, 2018
雄蕊形態異常を伴う栽培イチゴ核置換系統間のゲノム変異の検出

永野聡一郎, 永野聡一郎, 野口裕司, 平川英樹, 磯部祥子

園芸学研究別冊, Mar 24, 2018
栽培イチゴFaFT3の発現,機能解析

長谷川史織, 太田垣駿吾, 永野聡一郎, 磯部祥子, 白武勝裕, 松本省吾

園芸学研究別冊, Sep 2, 2017
イチゴの果実硬度に関するゲノミックセレクションの試み

永野聡一郎, 白澤健太, 平川英樹, 前田ふみ, 渡邉学, 野口裕司, 片岡園, 坪根正雄, 奥幸一郎, 田崎公久, 飯村一成, 中谷明弘, 柳智博, 磯部祥子

園芸学研究別冊, Sep 2, 2017
栽培イチゴ(Fragaria×ananassa)MAGIC集団を用いた完着期果実の遺伝子発現プロファイリング

永野聡一郎, 平川英樹, 和田卓也, 田崎公久, 前田ふみ, GHELFI Andrea, 森美幸, 鶴見理沙, 津金胤昭, 坪根正雄, 飯村一成, 白澤健太, 奥幸一郎, 大橋隆, 渡邉学, 生井潔, 磯部祥子

園芸学研究別冊, Sep 2, 2017
ホースグラムのドラフトゲノム解析

平川英樹, RAKESH C, 白澤健太, 永野聡一郎, 長崎英樹, TILAK S, 磯部祥子

育種学研究, Mar 29, 2017
異質八倍体栽培イチゴゲノムのフェージング配列の染色体への位置付けと祖先ゲノムの推定

白澤健太, 平川英樹, 寺地真由子, 永野聡一郎, 長崎英樹, 前田ふみ, 柳智博, 磯部祥子

育種学研究, Mar 29, 2017
イチゴ属の異質倍数化とゲノム構造の多様化に伴う形質および生育地環境の多様化

永野聡一郎, 白澤健太, 平川英樹, 林篤司, 七夕高也, 磯部祥子

日本生態学会大会講演要旨(Web), 2017
DenovoMAGICによるイチゴの全ゲノム解析

平川英樹, 白澤健太, 長崎英樹, 永野聡一郎, 前田ふみ, 磯部祥子

育種学研究, Sep 24, 2016
イチゴのハプロタイプ同定に向けた全ゲノム解析

永野聡一郎, 白澤健太, 長崎英樹, 平川英樹, 前田ふみ, 磯部祥子

園芸学研究別冊, Sep 10, 2016
SSR多型を用いたイチゴのヨーロッパと日本品種の系統解析

磯部祥子, 白澤健太, 永野聡一郎

園芸学研究別冊, Mar 26, 2016
サブクローバの全ゲノム解析

平川英樹, KAUR Parwinder, 白澤健太, NICHOLS Phillip, 永野聡一郎, APPELS Rudi, ERSKINE William, 磯部祥子

日本草地学会誌, Mar 25, 2016
サツマイモ2倍体野生種Ipomoea trifidaの全ゲノム解析

YOON Ung‐Han, 長崎秀樹, 田中勝, 平川英樹, 白澤健太, 永野聡一郎, 岡田吉弘, 田淵宏朗, 高畑康浩, HAHN Jang‐Ho, 磯部祥子

育種学研究, Mar 21, 2016
Axiomジェノタイピングアレイを用いた栽培イチゴの超高密度SNP連鎖地図の作成

永野聡一郎, 白澤健太, 平川英樹, 前田ふみ, 石川正美, 磯部祥子

園芸学研究別冊, Sep 26, 2015

Teaching Experience

Oct, 2020 - Present

Applied Bioinformatics (Graduate School of Agricultural Science, Tamagawa University)

Professional Memberships

Oct, 2017 - Present

The Japanese Forest Society
Jul, 2015 - Present

Japanese Society for Horticultural Science
Jun, 2015 - Present

American Society of Plant Biologists
Jan, 2006 - Present

The Ecological Society of Japan
Jul, 2005 - Present

The Botanical Society of Japan

Research Projects

Identification of gene networks associated with secondary cell wall layer structure.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2022 - Mar, 2025
A study on the seed dormancy release process of Abies sachalinensis

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, Apr, 2021 - Mar, 2025
Molecular approaches to the layer formation of secondary cell wall in xylem cells using a transcriptional induction system

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2019 - Mar, 2022

Takata Naoki
Analysis of male sterility associated gene networks between mitochondrial and nuclear genomes in the cultivated strawberry

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, Apr, 2017 - Mar, 2020

Nagano Soichiro

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Research Interests

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Research History

Committee Memberships

Papers

Books and Other Publications

Misc.

Awards

Presentations

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