Chemical and isotopic compositions of the Acropora nobilis skeleton were analyzed at various spatial resolutions to investigate the mechanism by which elements are incorporated into the skeleton. Chemical and isotopic profiles along growth axes of axial and radial corallites did not show seasonal variation, with the exception of the 5180 profile of the axial corallite. Detailed observations of the skeletal structure revealed that the skeletal density increased with distance from the tip because secondarily precipitated aragonite (here called the "infilling" skeleton) filled pore spaces in the "framework" skeleton. Micro-scale element analyses revealed that main part of the infilling skeleton had lower Mg/Ca and higher Sr/Ca and U/Ca than the framework skeleton. At microscale, Sr/Ca and U/Ca were positively correlated with each other, and negatively correlated with Mg/Ca but only weakly. The results showed that the infilling skeleton differed significantly from the adjacent framework skeleton in terms of not only formation chronology but also chemical composition, and that the bulk composition was influenced by the infilling/framework skeletal ratio. In order to use the Acropora skeleton as a paleoclimate archive, the relationship between environmental factors and the chemical composition of each skeletal component needs to be established. (C) 2008 Elsevier Ltd. All rights reserved.