SENO Shigeto


SENO Shigeto

J-GLOBAL         Last updated: Sep 13, 2019 at 03:54
 
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Name
SENO Shigeto
Affiliation
Osaka University
Section
Graduate School of Information Science and Technology Department of Bioinformatic Engineering
Job title
Associate Professor
Research funding number
30432462
ORCID ID
0000-0003-3861-6444

Research Interests

 
 

Research Areas

 
 

Published Papers

 
Cell Tracking based on Deep Learning with Depth Information for Intravital Fluorescence Imaging Data
Ayato Shimada, Shigeto Seno, Hironori Shigeta, Tomohiro Mashita, Yutaka Uchida, Masaru Ishii, Hideo Matsuda
IPSJ, Transactions on Mathematical Modeling and its Applications   12(2) 82-91   Jul 2019   [Refereed]
Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzabro Noguchi, Hideo Matsuda
Journal of Bioinformatics and Computational Biology   17(3) 1940008   Jul 2019   [Refereed]
Masafumi Minoshima, Junichi Kikuta, Yuta Omori, Shigeto Seno, Riko Suehara, Hiroki Maeda, Hideo Matsuda, Masaru Ishii, Kazuya Kikuchi
ACS Central Science   5 1059-1066   May 2019   [Refereed]
Kenichiro Takeda, Honami Sawazaki, Haruya Takahashi, YuSheng Yeh, HueiFen Jheng, Wataru Nomura, Takeshi Ara, Nobuyuki Takahashi, Shigeto Seno, Naoki Osato, Hideo Matsuda, Teruo Kawada, Tsuyoshi Goto
FEBS openbio      Jul 2018   [Refereed]
Yukako Sakaguchi, Keizo Nishikawa, Shigeto Seno, Hideo Matsuda, Hiroshi Takayanagi, Masaru Ishii
Scientific reports   8(1) 7504   May 2018   [Refereed]
Masayuki Furuya, Junichi Kikuta, Sayumi Fujimori, Shigeto Seno, Hiroki Maeda, Mai Shirazaki, Maki Uenaka, Hiroki Mizuno, Yoriko Iwamoto, Akito Morimoto, Kunihiko Hashimoto, Takeshi Ito, Yukihiro Isogai, Masafumi Kashii, Takashi Kaito, Shinsuke Ohba, Ung-il Chung, Alexander C. Lichtler, Kazuya Kikuchi, Hideo Matsuda, Hideki Yoshikawa, Masaru Ishii
Nature Communications   9(1) 300   Jan 2018   [Refereed]
Babak Ehteshami Bejnordi, Mitko Veta, Paul Johannes van Diest, Bram van Ginneken, Nico Karssemeijer, Geert Litjens, Jeroen A. W. M. van der Laak, Meyke Hermsen, Quirine F Manson, Maschenka Balkenhol, Oscar Geessink, Nikolaos Stathonikos, Marcory CRF van Dijk, Peter Bult, Francisco Beca, Andrew H Beck, Dayong Wang, Aditya Khosla, Rishab Gargeya, Humayun Irshad, Aoxiao Zhong, Qi Dou, Quanzheng Li, Hao Chen, Huang-Jing Lin, Pheng-Ann Heng, Christian Hass, Elia Bruni, Quincy Wong, Ugur Halici, Mustafa Ümit Öner, Rengul Cetin-Atalay, Matt Berseth, Vitali Khvatkov, Alexei Vylegzhanin, Oren Kraus, Muhammad Shaban, Nasir Rajpoot, Ruqayya Awan, Korsuk Sirinukunwattana, Talha Qaiser, Yee-Wah Tsang, David Tellez, Jonas Annuscheit, Peter Hufnagl, Mira Valkonen, Kimmo Kartasalo, Leena Latonen, Pekka Ruusuvuori, Kaisa Liimatainen, Shadi Albarqouni, Bharti Mungal, Ami George, Stefanie Demirci, Nassir Navab, Seiryo Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, Hady Ahmady Phoulady, Vassili Kovalev, Alexander Kalinovsky, Vitali Liauchuk, Gloria Bueno, M. Milagro Fernandez-Carrobles, Ismael Serrano, Oscar Deniz, Daniel Racoceanu, Rui Venâncio
JAMA   318(22) 2199-2210   Dec 2017   [Refereed]
Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature
Hironori Shigeta, Tomohiro Mashita, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Masaru Ishii, Hideo Matsuda
Journal of Bioinformatics and Computational Biology   15(5)    Sep 2017   [Refereed]
Over-expression of PPARα in obese mice adipose tissue improves insulin sensitivity
Haruya Takahashi, Kohei Sanada, Hiroyuki Nagai, Yongjia Li, Yumeko Aoki, Takeshi Ara, Shigeto Seno, Hideo Matsuda, Rina Yu, Teruo Kawada, Tsuyoshi Goto
Biochemical and Biophysical Research Communications   493(1) 108-114   Sep 2017   [Refereed]
A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli
Bei-Wen Ying, Shigeto Seno, Hideo Matsuda, Tetsuya Yomo
Biochemical and Biophysical Research Communications   486(3) 852-857   May 2017   [Refereed]

Misc

 
Quantitative Data Analysis for Live Imaging of Bone
Shigeto Seno
   Jan 2018   [Invited]

Conference Activities & Talks

 
Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis
Mitsuhiro Eto, Wataru Hirota, Shigeto Seno, Hideo Matsuda
IDASB2018 (The 9th Integrative Data Analysis in Systems Biology)   3 Dec 2018   
Jun Usami, Hironori Shigeta, Tomohiro Mashita, Yoshihiro Kuroda, Junichi Kikuta, Shigeto Senoo, Masaru Ishii, Hideo Matsuda, Haruo Takemura
IPSJ SIG Notes   24 Feb 2014   
Emerging bio-imaging technologies are expected to contribute to the discovery of new drugs and the mechanisms by which diseases survive. In applications involving cell and bacterial imaging, extracting a particular region or detecting cell motion ...
Hironori Shigeta, Tomohiro Mashita, Takeshi Kaneko, Junichi Kikuta, Shigeto Senoo, Haruo Takemura, Hideo Matsuda, Masaru Ishii
IPSJ SIG technical reports   14 Mar 2013   
Recent developments in bio-imaging techniques have enabled in-vivo imaging. These techniques are expected to contribute to drug discovery, clarification of disease mechanisms, and others. To this end, extracting target characteristics from bio-ima...
IPSJ SIG Notes   20 Feb 2013   
Estimating gene regulatory networks reveals complicated regulations. However, the number of conditions or time points of gene expression profiles is fewer than that of genes. It causes degrading the estimation accuracy. In this study, we propose a...
OKUMA YUTA, SENO SHIGETO, TAKENAKA YOICHI, MATSUDA HIDEO
IEICE technical report. Neurocomputing   21 Jun 2012   
Gene function is researched and gene functional information which is annotated on gene is increasing continuously. Gene Set Analysis is one of a method using gene functional information, and we use it when we want to compare two groups. However, t...
Yuta Okuma, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
IPSJ SIG technical reports   21 Jun 2012   
Gene function is researched and gene functional information which is annotated on gene is increasing continuously. Gene Set Analysis is one of a method using gene functional information, and we use it when we want to compare two groups. However, t...
Daisuke Ueta, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
IPSJ SIG Notes   23 Feb 2012   
We propose a method to describe DNA sequence structures as direct acyclic graphs from short reads generated by high-throughput sequencer. The sequenced DNA fragments are called the short reads and they inherent sequence structures. Although short ...
IKEDA SEIGO, KIDO YOSHIYUKI, SENO SHIGETO, TAKENAKA YOICHI, MATSUDA HIDEO
IEICE technical report. Neurocomputing   16 Jun 2011   
In bioinformatics, workflows have used frequently to combine many tools or services. But it have been difficult to use REST services by workflow tools, because there is no way to read their specification computationally. In this research, we propo...
Kiyoshi Yoshizawa, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda
IPSJ SIG Notes   28 Feb 2011   
We propose a mathmatical model of crosstalks on cell differentiation. Cell differentiation is the process that a stem cell(such as an ES or iPS cell) changes to a specific type of cell, and attracts lots of attention from researchers of medicine a...
吉川 達也, 瀬尾 茂人, 竹中 要一, 松田 秀雄
情報処理学会研究報告. BIO, バイオ情報学   25 Feb 2010   
相互作用するタンパク質ペアを高精度に識別するために,タンパク質間ドッキングの評価結果に基づいた相互作用予測法を提案する.従来研究では,相互作用に必要な親和性の強さはタンパク質の機能と無関係であると仮定していた.ところが,この親和性の強さは,剛体ドッキングやフレキシブルドッキングのようなドッキング様式によって異なり,この様式はタンパク質の機能に関係していることが分かってきた.本研究では,タンパク質の機能情報に基づいてサンプリングした親和性スコア分布を統計的に解析する新たなスコアリング手法を提...