ABE Takashi

J-GLOBAL         Last updated: Nov 14, 2018 at 16:16
 
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Name
ABE Takashi
Affiliation
Niigata University
Section
Faculty of Engineering Department of Engineering
Job title
Associate Professor

Research Areas

 
 

Academic & Professional Experience

 
Apr 2001
 - 
Mar 2004
Researcher, Kyowa Hakko Co., Ltd.
 
Apr 2004
 - 
Mar 2007
Assistant Professor, National Institute of Genetics
 
Apr 2007
 - 
Sep 2011
Assistant Professor, Nagahama Institute of Bio-Science and Technology
 
Oct 2011
 - 
Mar 2017
Associate Professor, Faculty of Engineering Department of Information Engineering Computer Science, Niigata University
 
Oct 2011
 - 
Today
Associate Professor, Graduate School of Science and Technology Electrical and Information Engineering, Niigata University
 
Apr 2017
 - 
Today
Associate Professor, Faculty of Engineering Department of Engineering, Niigata University
 

Published Papers

 
Takafumi Ueda, Hiroshi Tarui, Nobuhide Kido, Keitaro Imaizumi, Kenji Hikosaka, Takashi Abe, Daisuke Minegishi, Yoshifumi Tada, Masataka Nakagawa, Sohei Tanaka, Tomoko Omiya, Kouki Morikaku, Minori Kawahara, Takane Kikuchi-Ueda, Teruo Akuta, and Yasuo Ono
Genomics   In Press.    Sep 2018   [Refereed]
Tomoko Miyauchi, Atsushi Kouzuma, Takashi Abe, and Kazuya Watanabe.
Microbiology Resource Announcements   7 e01028018   Aug 2018   [Refereed]
Shiho Torii, Yasuko Orba, Bernard M. Hang’ombe, Aaron S. Mweene, Yuji Wada, Paulina D. Anindita, Wallaya Phongphaew, Yongjin Qiu, Masahiro Kajihara, Akina Mori-Kajihara, Yoshiki Eto, Hayato Harima, Michihito Sasaki, Michael Carr, William W. Hall, Yuki Eshita, Takashi Abe, and Hirofumi Sawa.
Virus Reserach   250 31-36   May 2018   [Refereed]
Methylomusa anaerophila gen. nov., sp. nov., an anaerobic methanol-utilizing bacterium isolated from a microbial fuel cell.
Nanako Amano, Ayaka Yamamuro, Morio Miyahara, Atsushi Kouzuma, Takashi Abe, and Kazuya Watanabe.
International Journal of Systematic and Evolutionary Microbiology   68 1118-1122   Feb 2018   [Refereed]
Daniel J. Shea, Motoki Shimizu, Namiko Nishida, Eigo Fukai, Takashi Abe, Ryo Fujimoto and Keiichi Okazaki.
BMC Genetics   18(101)    Dec 2017   [Refereed]

Books etc

 
Advances in Viral Genomes Research; Novel bioinformatics method to analyze more than 10,000 influenza virus strains easily at once: Batch-Learning Self Organizing Map (BLSOM).
Yuki Iwasaki, Toshimichi Ikemura, Kennosuke Wada, Yoshiko Wada, Takashi Abe. (Part:Contributor)
Nova Science Publishers, Inc.   Dec 2013   
Encyclopedia of Metagenomics; tRNADB-CE and use of tRNAs as phylogenetic markers for metagenomic sequences.
Karen E. Nelson (Ed.) Takashi Abe, Hachiro Inokuchi, Yuko Yamada, Akira Muto, Yuki Iwasaki, Toshimichi Ikemura. (Part:Contributor)
Springer   Mar 2013   
Knowledge-Based Bioinformatics; 10 Sequences from prokaryotic, eukaryotic and viral genomes currently available clustered according to phylotype on a large-scale Self-Organizing Map.
Gil Alterovitz and Marco Ramoni (Eds.) Takashi Abe, Shigehiko Kanaya and Toshimichi Ikemura. (Part:Contributor, 233-249)
Wiley & Sons, Ltd.   Sep 2010   ISBN:4781301142
Computational Biology: New Research; A Linkage Disequilibrium-based Statistical Approach to Discovering Interractions among SNP Alleles at Multiple Loci Contributing to Human Skin Pigmentation Variation.
Alona S. Russe (Ed.) Sumiko Anno and Takashi Abe (Part:Joint Work, 19-27)
Nova Science Publishers   Oct 2008   ISBN:1606920405
DNA structure, Chromatin and Gene Expression; Characterization of transcriptional regulatory signals with novel bioinformatics tools.
Ryoichi Kiyama and Misuhiro Shimizu (Eds.) Takashi Abe, Hideaki Sugawara, Shigehiko Kanaya, Yoko Kosaka and Toshimichi Ikemura. (Part:Joint Work, 1-16)
Transworld Research Network.   Jan 2006   ISBN:8178952289

Conference Activities & Talks

 
A bioinformatics analysis for efficient knowledge discovery from big sequence data with BLSOM [Invited]
ABE Takashi
Mar 2016   
Metagenomic analysis for unveiling of microbial diversities within tick guts [Invited]
ABE Takashi
International Union of Microbiological Societies 2011 Congress   Sep 2011