三森隆広 (Takahiro Mimori) - マイポータル

基本情報

所属: 早稲田大学理工学術院総合研究所次席研究員 (研究院講師)

J-GLOBAL ID: 201801018907838514
researchmap会員ID: 7000022417

研究分野

情報通信 / 生命、健康、医療情報学 /

経歴

2022年4月 - 現在

早稲田大学理工学術院総合研究所次席研究員 (研究院講師)
2019年1月 - 2022年3月

特定国立研究開発法人理化学研究所革新知能統合研究センター

論文

Novel metric for hyperbolic phylogenetic tree embeddings.

Hirotaka Matsumoto, Takahiro Mimori, Tsukasa Fukunaga

Biology methods & protocols 6(1) bpab006 2021年
Diagnostic Uncertainty Calibration: Towards Reliable Machine Predictions in Medical Domain.

Takahiro Mimori, Keiko Sasada, Hirotaka Matsui, Issei Sato

International Conference on Artificial Intelligence and Statistics, AISTATS 2021 3664-3672 2021年査読有り筆頭著者
CD45+CD326+ Cells are Predictive of Poor Prognosis in Non-Small Cell Lung Cancer Patients.

Kota Ishizawa, Mie Yamanaka, Yuriko Saiki, Eisaku Miyauchi, Shinichi Fukushige, Tetsuya Akaishi, Atsuko Asao, Takahiro Mimori, Ryota Saito, Yutaka Tojo, Riu Yamashita, Michiaki Abe, Akira Sakurada, Nhu-An Pham, Ming Li, Yoshinori Okada, Tadashi Ishii, Naoto Ishii, Seiichi Kobayashi, Masao Nagasaki, Masakazu Ichinose, Ming-Sound Tsao, Akira Horii

Clinical cancer research : an official journal of the American Association for Cancer Research 25(22) 6756-6763 2019年11月15日
Construction of full-length Japanese reference panel of class I HLA genes with single-molecule, real-time sequencing.

Takahiro Mimori, Jun Yasuda, Yoko Kuroki, Tomoko F Shibata, Fumiki Katsuoka, Sakae Saito, Naoki Nariai, Akira Ono, Naomi Nakai-Inagaki, Kazuharu Misawa, Keiko Tateno, Yosuke Kawai, Nobuo Fuse, Atsushi Hozawa, Shinichi Kuriyama, Junichi Sugawara, Naoko Minegishi, Kichiya Suzuki, Kengo Kinoshita, Masao Nagasaki, Masayuki Yamamoto

The pharmacogenomics journal 19(2) 136-146 2019年4月
Maternity Log study: a longitudinal lifelog monitoring and multiomics analysis for the early prediction of complicated pregnancy.

Junichi Sugawara, Daisuke Ochi, Riu Yamashita, Takafumi Yamauchi, Daisuke Saigusa, Maiko Wagata, Taku Obara, Mami Ishikuro, Yoshiki Tsunemoto, Yuki Harada, Tomoko Shibata, Takahiro Mimori, Junko Kawashima, Fumiki Katsuoka, Takako Igarashi-Takai, Soichi Ogishima, Hirohito Metoki, Hiroaki Hashizume, Nobuo Fuse, Naoko Minegishi, Seizo Koshiba, Osamu Tanabe, Shinichi Kuriyama, Kengo Kinoshita, Shigeo Kure, Nobuo Yaegashi, Masayuki Yamamoto, Satoshi Hiyama, Masao Nagasaki

BMJ open 9(2) e025939 2019年2月19日
Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare.

Jun Yasuda, Kengo Kinoshita, Fumiki Katsuoka, Inaho Danjoh, Mika Sakurai-Yageta, Ikuko N Motoike, Yoko Kuroki, Sakae Saito, Kaname Kojima, Matsuyuki Shirota, Daisuke Saigusa, Akihito Otsuki, Junko Kawashima, Yumi Yamaguchi-Kabata, Shu Tadaka, Yuichi Aoki, Takahiro Mimori, Kazuki Kumada, Jin Inoue, Satoshi Makino, Miho Kuriki, Nobuo Fuse, Seizo Koshiba, Osamu Tanabe, Masao Nagasaki, Gen Tamiya, Ritsuko Shimizu, Takako Takai-Igarashi, Soichi Ogishima, Atsushi Hozawa, Shinichi Kuriyama, Junichi Sugawara, Akito Tsuboi, Hideyasu Kiyomoto, Tadashi Ishii, Hiroaki Tomita, Naoko Minegishi, Yoichi Suzuki, Kichiya Suzuki, Hiroshi Kawame, Hiroshi Tanaka, Yasuyuki Taki, Nobuo Yaegashi, Shigeo Kure, Fuji Nagami, Kenjiro Kosaki, Yoichi Sutoh, Tsuyoshi Hachiya, Atsushi Shimizu, Makoto Sasaki, Masayuki Yamamoto

Journal of biochemistry 165(2) 139-158 2019年2月1日
Construction of JRG (Japanese reference genome) with single-molecule real-time sequencing.

Masao Nagasaki, Yoko Kuroki, Tomoko F Shibata, Fumiki Katsuoka, Takahiro Mimori, Yosuke Kawai, Naoko Minegishi, Atsushi Hozawa, Shinichi Kuriyama, Yoichi Suzuki, Hiroshi Kawame, Fuji Nagami, Takako Takai-Igarashi, Soichi Ogishima, Kaname Kojima, Kazuharu Misawa, Osamu Tanabe, Nobuo Fuse, Hiroshi Tanaka, Nobuo Yaegashi, Kengo Kinoshita, Shiego Kure, Jun Yasuda, Masayuki Yamamoto

Human genome variation 6 27-27 2019年
HLA-VBSeq v2: improved HLA calling accuracy with full-length Japanese class-I panel.

Yen-Yen Wang, Takahiro Mimori, Seik-Soon Khor, Olivier Gervais, Yosuke Kawai, Yuki Hitomi, Katsushi Tokunaga, Masao Nagasaki

Human genome variation 6 29-29 2019年
STR-realigner: a realignment method for short tandem repeat regions.

Kaname Kojima, Yosuke Kawai, Kazuharu Misawa, Takahiro Mimori, Masao Nagasaki

BMC genomics 17(1) 991-991 2016年12月3日
AP-SKAT: highly-efficient genome-wide rare variant association test.

Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Kazuharu Misawa, Takahiro Mimori, Masao Nagasaki

BMC genomics 17(1) 745-745 2016年9月21日
Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree.

Kaname Kojima, Yosuke Kawai, Naoki Nariai, Takahiro Mimori, Takanori Hasegawa, Masao Nagasaki

BMC genomics 17 Suppl 5 494-494 2016年8月31日
[Construction of 1070 Whole-genome Japanese Reference Panel and Bioinformatics].

Masao Nagasaki, Yosuke Kawai, Kaname Kojima, Takahiro Mimori, Yumi Yamaugchi-Kabata

Seikagaku. The Journal of Japanese Biochemical Society 88(1) 15-24 2016年2月
A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes.

Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yosuke Kawai, Masao Nagasaki

BMC genomics 17 Suppl 1 2-2 2016年1月11日
Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals.

Yosuke Kawai, Takahiro Mimori, Kaname Kojima, Naoki Nariai, Inaho Danjoh, Rumiko Saito, Jun Yasuda, Masayuki Yamamoto, Masao Nagasaki

Journal of human genetics 60(10) 581-7 2015年10月
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals.

Masao Nagasaki, Jun Yasuda, Fumiki Katsuoka, Naoki Nariai, Kaname Kojima, Yosuke Kawai, Yumi Yamaguchi-Kabata, Junji Yokozawa, Inaho Danjoh, Sakae Saito, Yukuto Sato, Takahiro Mimori, Kaoru Tsuda, Rumiko Saito, Xiaoqing Pan, Satoshi Nishikawa, Shin Ito, Yoko Kuroki, Osamu Tanabe, Nobuo Fuse, Shinichi Kuriyama, Hideyasu Kiyomoto, Atsushi Hozawa, Naoko Minegishi, James Douglas Engel, Kengo Kinoshita, Shigeo Kure, Nobuo Yaegashi, Masayuki Yamamoto

Nature communications 6 8018-8018 2015年8月21日
Estimating copy numbers of alleles from population-scale high-throughput sequencing data.

Takahiro Mimori, Naoki Nariai, Kaname Kojima, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Masao Nagasaki

BMC bioinformatics 16 Suppl 1 S4 2015年
HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.

Naoki Nariai, Kaname Kojima, Sakae Saito, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Jun Yasuda, Masao Nagasaki

BMC genomics 16 Suppl 2 S7 2015年
SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing.

Yukuto Sato, Kaname Kojima, Naoki Nariai, Yumi Yamaguchi-Kabata, Yosuke Kawai, Mamoru Takahashi, Takahiro Mimori, Masao Nagasaki

BMC genomics 15 664-664 2014年8月8日
HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads

Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki

ALGORITHMS FOR COMPUTATIONAL BIOLOGY 8542 107-118 2014年
SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints

Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Testuo Shibuya, Masao Nagasaki

ALGORITHMS FOR COMPUTATIONAL BIOLOGY 8542 208-219 2014年

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