Takaki Yamauchi

Profile Information

Affiliation: Bioscience and Biotechnology Center, Nagoya University

Degree: 農学(Sep, 2009, 千葉大学)

ORCID ID: https://orcid.org/0000-0002-6772-6506
J-GLOBAL ID: 201601019805770836
researchmap Member ID: B000254671

Research Interests

Research Areas

Environmental science/Agricultural science / Plant genetics and breeding /

Research History

Jan, 2021 - Present

Associate Professor, Bioscience and Biotechnology Center, Nagoya University
Oct, 2017 - Sep, 2021

PRESTO Researcher, Japan Science and Technology Agency (JST)
Apr, 2017 - Sep, 2017

Graduate School of Agricultural and Life Sciences, The University of Tokyo
Apr, 2015 - Mar, 2017

Graduate School of Bioagricultural Sciences, Nagoya University
Apr, 2012 - Mar, 2015

日本学術振興会特別研究員(PD)
Apr, 2011 - Mar, 2012

Graduate School of Bioagricultural Sciences, Nagoya University
Apr, 2009 - Mar, 2011

Graduate School of Agricultural and Life Sciences, The University of Tokyo
Apr, 2005 - Mar, 2009

National Institute for Basic Biology

Education

Apr, 2006 - Sep, 2009

Diversity and Fractal Science, Graduate School of Science and Technology, Chiba University
Apr, 2004 - Mar, 2006

Graduate School of Science and Technology, Chiba University
Apr, 2000 - Mar, 2004

Bioproduction Science, Faculty of Horticulture, Chiba University

Committee Memberships

Apr, 2023 - Present

Editorial Board, RICE
Apr, 2020 - Present

councilor, Japanese Society for Root Research
Mar, 2020 - Present

Associate Editor, Plants
Feb, 2019 - Present

Associate Editor, Frontiers in Plant Science
Apr, 2018 - Present

Subject Editor, Plant Root

Major Awards

Apr, 2021

MEXT Young Scientists' Prize, Ministry of Education, Culture, Sports, Science and Technology
Nov, 2019

Japan Prize in Agricultural Sciences, Achievement Award for Young Scientists, Study of Root Anatomical Traits That Contribute to Environmental Adaptation of plants in the family Poaceae., The Foundation of Agricultural Sciences of Japan

Takaki Yamauchi
Sep, 2014

The JSRR Young Investigator Award, Japanese Society for Root Research

Takaki Yamauchi
Oct, 2013

Young Scientist Award, International Society for Plant Anaerobiosis

Takaki Yamauchi

Papers

Strong plastic responses in aerenchyma formation in F1 hybrids of Imperata cylindrica under different soil moisture conditions

Y. Nomura, S. Arima, D. Kyogoku, T. Yamauchi, T. Tominaga

Plant Biology, 26(3) 446-456, Mar 25, 2024 Peer-reviewed
Root anatomical plasticity contributes to the different adaptive responses of two Phragmites species to water-deficit and low-oxygen conditions

Takaki Yamauchi, Kurumi Sumi, Hiromitsu Morishita, Yasuyuki Nomura

Functional Plant Biology, 51(4) FP23231, Mar 14, 2024 Peer-reviewedLead authorCorresponding author
Age-dependent analysis dissects the stepwise control of auxin-mediated lateral root development in rice

Takaki Yamauchi, Akihiro Tanaka, Mikio Nakazono, Yoshiaki Inukai

Plant Physiology, 194(2) 819-831, Feb, 2024 Peer-reviewedLead authorCorresponding author
Asymmetric auxin distribution establishes a contrasting pattern of aerenchyma formation in the nodal roots of Zea nicaraguensis during gravistimulation

Jiayang Ning, Takaki Yamauchi, Hirokazu Takahashi, Fumie Omori, Yoshiro Mano, Mikio Nakazono

Frontiers in Plant Science, 14 1133009, Apr, 2023 Peer-reviewed
Genetic basis controlling rice plant architecture and its modification for breeding

Wakana Tanaka, Takaki Yamauchi, Katsutoshi Tsuda

Breeding Science, 73(1) 3-45, Mar, 2023 Peer-reviewedInvitedLead author
Modeling-based age-dependent analysis reveals the net patterns of ethylene-dependent and -independent aerenchyma formation in rice and maize roots

Takaki Yamauchi, Mikio Nakazono

Plant Science, 321 111340-111340, Aug, 2022 Peer-reviewedLead authorCorresponding author
Mechanisms of lysigenous aerenchyma formation under abiotic stress

Takaki Yamauchi, Mikio Nakazono

Trends in Plant Science, 27(1) 13-15, Jan, 2022 Peer-reviewedLead authorCorresponding author
Key root traits of Poaceae for adaptation to soil water gradients

Takaki Yamauchi, Ole Pedersen, Mikio Nakazono, Nobuhiro Tsutsumi

New Phytologist, 229(6) 3133-3140, Mar, 2021 Peer-reviewedLead authorCorresponding author
Climate-smart crops: key root anatomical traits that confer flooding tolerance

Takaki Yamauchi, Koji Noshita, Nobuhiro Tsutsumi

Breeding Science, 71(1) 51-61, Feb, 2021 Peer-reviewedInvitedLead authorCorresponding author
Targeted gene disruption of ATP synthases 6‐1 and 6‐2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs

Shin‐ichi Arimura, Hiroki Ayabe, Hajime Sugaya, Miki Okuno, Yoshiko Tamura, Yu Tsuruta, Yuta Watari, Shungo Yanase, Takaki Yamauchi, Takehiko Itoh …

The Plant Journal, 104(6) 1457-1458, Dec, 2020 Peer-reviewed
Distance-to-time conversion using Gompertz model reveals age-dependent aerenchyma formation in rice roots

Takaki Yamauchi, Mikio Nakazono, Yoshiaki Inukai, Nobuhiro Tsutsumi

Plant Physiology, 183(4) 1424-1427, Aug, 2020 Peer-reviewedLead author
A role for auxin in ethylene-dependent inducible aerenchyma formation in rice roots.

Takaki Yamauchi, Akihiro Tanaka, Nobuhiro Tsutsumi, Yoshiaki Inukai, Mikio Nakazono

Plants, 9(5) 610, May, 2020 Peer-reviewedInvited
Fine control of aerenchyma and lateral root development through AUX/IAA- and ARF-dependent auxin signaling.

Takaki Yamauchi, Akihiro Tanaka, Hiroki Inahashi, Naoko K Nishizawa, Nobuhiro Tsutsumi, Yoshiaki Inukai, Mikio Nakazono

Proceedings of the National Academy of Sciences of the United States of America, 116(41) 20770-20775, Oct 8, 2019 Peer-reviewedLead authorCorresponding author
Root Cortex Provides a Venue for Gas-Space Formation and Is Essential for Plant Adaptation to Waterlogging.

Takaki Yamauchi, Fumitaka Abe, Nobuhiro Tsutsumi, Mikio Nakazono

Frontiers in Plant Science, 10 259-259, 2019 Peer-reviewedInvitedLead authorCorresponding author
OsPIN2, which encodes a member of the auxin efflux carrier proteins, is involved in root elongation growth and lateral root formation patterns via the regulation of auxin distribution in rice.

Hiroki Inahashi, Israt Jahan Shelley, Takaki Yamauchi, Shunsaku Nishiuchi, Misuzu Takahashi-Nosaka, Maya Matsunami, Atsushi Ogawa, Yusaku Noda, Yoshiaki Inukai

Physiologia Plantarum, 164(2) 216-225, Jul, 2018 Peer-reviewed
Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress

Takaki Yamauchi, Timothy D. Colmer, Ole Pedersen, Mikio Nakazono

Plant Physiology, 176(2) 1118-1130, Feb, 2018 Peer-reviewedInvitedLead author
METALLOTHIONEIN genes encoding ROS scavenging enzymes are down-regulated in the root cortex during inducible aerenchyma formation in rice.

Takaki Yamauchi, Aya Fukazawa, Mikio Nakazono

Plant Signaling & Behavior, 12(11) e1388976, Nov 2, 2017 Peer-reviewedLead author
An NADPH Oxidase RBOH Functions in Rice Roots during Lysigenous Aerenchyma Formation under Oxygen-Deficient Conditions.

Takaki Yamauchi, Miki Yoshioka, Aya Fukazawa, Hitoshi Mori, Naoko K Nishizawa, Nobuhiro Tsutsumi, Hirofumi Yoshioka, Mikio Nakazono

The Plant Cell, 29(4) 775-790, Apr, 2017 Peer-reviewedLead author
Ethylene-dependent aerenchyma formation in adventitious roots is regulated differently in rice and maize.

Takaki Yamauchi, Akihiro Tanaka, Hitoshi Mori, Itsuro Takamure, Kiyoaki Kato, Mikio Nakazono

Plant, Cell & Environment, 39(10) 2145-57, Oct, 2016 Peer-reviewedLead authorCorresponding author
Ethylene Biosynthesis Is Promoted by Very-Long-Chain Fatty Acids during Lysigenous Aerenchyma Formation in Rice Roots.

Takaki Yamauchi, Katsuhiro Shiono, Minoru Nagano, Aya Fukazawa, Miho Ando, Itsuro Takamure, Hitoshi Mori, Naoko K Nishizawa, Maki Kawai-Yamada, Nobuhiro Tsutsumi …

Plant Physiology, 169(1) 180-93, Sep, 2015 Peer-reviewedInvitedLead author

Major Misc.

Measurement of plant tissue porosity: IV. Characteristic and selection of each method

Satoshi SHIMAMURA, Tomoki MIYASHITA, Masato EJIRI, Katsuhiro SHIONO, Yasuyuki NOMURA, Takaki YAMAUCHI

Root Research, 30(4) 124-128, Dec 20, 2021 Peer-reviewedLast author
Measurement of plant tissue porosity: III. Cross-section method

Yasuyuki Nomura, Katsuhiro Shiono, Satoshi Shimamura, Takaki Yamauchi

Plant Root, 30(3) 76-82, Sep, 2021 Peer-reviewedLast authorCorresponding author
Measurement of plant tissue porosity: II. Archimedes method

Tomoki MIYASHITA, Masato EJIRI, Satoshi SHIMAMURA, Takaki YAMAUCHI, Katsuhiro SHIONO

Root Research, 30(2) 41-45, Jun 20, 2021 Peer-reviewed
Measurement of plant tissue porosity: I. Pycnometer method

Satoshi Shimamura, Katsuhiro Shiono, Takaki Yamauchi

Root Research, 30(1) 8-12, Mar, 2021 Peer-reviewed

Books and Other Publications

農業技術大系・作物編（追録第41号）

山内卓樹. (Role: Contributor, イネが水田で生育するしくみ ―根の解剖学的観点から―)

農山漁村文化協会, Feb 5, 2020
イネ大事典

山内卓樹. (Role: Contributor, イネが水田で生育するしくみ ―根の解剖学的観点から―)

農山漁村文化協会, Jan 25, 2020 (ISBN: 4540191349)
最新農業技術作物 vol.9: 特集:水田雑草/イネ多収品種

山内卓樹. (Role: Contributor, イネの過湿土壌への適応に貢献する根の解剖学的特徴)

農山漁村文化協会, Feb 10, 2017 (ISBN: 4540160583)
植物学の百科事典

山内卓樹, 星野敦. (Role: Contributor, 遺伝子のノックアウトとノックダウン.)

丸善出版, Jun 19, 2016 (ISBN: 9784621300381)
農業技術大系・作物編（追録第38号）

山内卓樹. (Role: Contributor, イネの過湿土壌への適応に貢献する根の解剖学的特徴)

農文協, 2016
Advances in New Technology for Targeted Modification of Plant Genomes

Yamauchi T, Iida S. (Role: Contributor, Gene targeting in crop species with effective selection systems.)

Apr 21, 2015
Low-Oxygen Stress in Plants

Takahashi H, Yamauchi T, Colmer TD, Nakazono M. (Role: Contributor, Aerenchyma formation in plants)

Springer, Jan 17, 2014
植物のエピジェネティクス : 発生分化、環境適応、進化を制御するDNAとクロマチンの修飾

定塚(久富)恵世, 星野敦, 森田裕将, 山内卓樹, 朴慶一, 寺田理枝, 森藤暁, 飯田滋. (Role: Contributor, アサガオとイネのDNAメチル化と遺伝子発現.)

秀潤社, Apr 1, 2008 (ISBN: 9784879623676)
Rice Biology in the Genomics Era

Johzuka-Hisatomi Y, Maekawa M, Takagi K, Eun C-H, Yamauchi T, Shimatani Z, Ahmed N, Urawa H, Tsugane K, Terada R, Iida S. (Role: Contributor, Homologous recombination-dependent gene targeting and an active DNA transposon nDart-promoted gene tagging for rice functional genomics.)

Springer, 2008

Major Presentations

Root anatomical adaptation to drought and flooding: compatible or not?

Takaki Yamauchi

The Online International Webinar on Agricultural Sciences, “Advances in Agricultural Research for People’s Well Being”, Apr 27, 2022 Invited
Root anatomical traits that correlate with environmental adaptation of plants

Takaki Yamauchi

The 62nd Annual Meeting of the Japanese Society of Plant Physiologists, Mar 15, 2021 Invited
Environment-Dependent Root Developmental Processes Common in Various Poaceae Species

Takaki Yamauchi, Mikio Nakazono, Nobuhiro Tsutsumi

The 61st Annual Meeting of the Japanese Society of Plant Physiologists, Mar 20, 2020 Invited
Hormonal control of internal gas-space formation and its adaptive significance.

Takaki Yamauchi

International Symposium on the Future Direction of Plant;Science by Young Researchers, Dec 17, 2019 Invited
イネ科植物の根を対象にした過湿環境に対する応答・適応機構の研究.

山内卓樹

第41回根研究集会, Sep 6, 2014 Invited

Teaching Experience

Apr, 2023 - Present

Plant Physiology 2 (Nagoya University)
Apr, 2023 - Present

Introduction to Life Sciences B (Nagoya University)
Apr, 2023 - Present

Biotechnology (Nagoya University)
Apr, 2022 - Present

Department of Plant Production Sciences, On-the-job training (Nagoya University)
2021 - Present

Laboratory and Practice on Bioresource Sciences (Nagoya University)
2021 - Present

Plant Molecular Breeding (Nagoya University)
2021 - Present

Plant Genome Utilization (Nagoya University)
2021 - 2022

Biotechnology (Nagoya University)
2018 - 2019

Cell Biology (The University of Tokyo)

Professional Memberships

Feb, 2023 - Present

International Society for Plant Low Oxygen Research (ISPLORE)
Apr, 2009 - Present

JAPANESE SOCIETY FOR ROOT RESEARCH
Apr, 2008 - Present

JAPANESE SOCIETY OF BREEDING
Apr, 2006 - Present

THE JAPANESE SOCIETY OF PLANT PHYSIOLOGISTS
Sep, 2011 - Feb, 2023

International Society for Plant Anaerobiosis (ISPA)

Research Projects

Functional analysis of TOR-EIN2 signaling as a hub for environmental responses

The Naito Grant for the advancement of natural science, The Naito Foundation, Oct, 2023 - Sep, 2025

Takaki Yamauchi, Yuichiro Tsuchiya
不規則なリン濃度に応答した根の発生と共生の経時変動に関する研究

科学研究費助成事業学術変革領域研究(A), 日本学術振興会, Apr, 2023 - Mar, 2025

山内卓樹
Genetic analysis of passage cell numbers in roots: towards optimization of water use efficiency of crops

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B), Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2022 - Mar, 2025
転移因子を利用した作物の遺伝子改変技術の確立

基盤研究（C）, 日本学術振興会, Apr, 2019 - Mar, 2023

山内卓樹
気候変動への適応を支える根の形質可塑性の分子基盤の解明

戦略的創造研究推進事業さきがけ, 国立研究開発法人科学技術振興機構（JST）, Oct, 2017 - Sep, 2021

山内卓樹
イネ科植物の耐湿性に関わる通気組織形成メカニズムの解明

特別研究員奨励費, 日本学術振興会（JSPS）, Apr, 2012 - Mar, 2015

山内卓樹

Industrial Property Rights

特開2008-253254 高効率変異導入法

飯田滋, 寺田理枝, 定塚恵世, 山内卓樹
WO2008-059711 高等植物のプロモーター活性の解析用ベクター及びその利用方法

飯田滋, 寺田理枝, 定塚恵世, 山内卓樹

Social Activities

植物の根に個性はあるのか？ストレスに負けない作物を目指して

Other

河合塾グループ, 河合塾【みらいぶっく〜学問研究紹介】, Mar 22, 2024 - Present

Profile Information

Research Interests

Research Areas

Research History

Education

Committee Memberships

Major Awards

Papers

Major Misc.

Books and Other Publications

Major Presentations

Teaching Experience

Professional Memberships

Research Projects

Industrial Property Rights

Social Activities

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Coauthors