SHIMAMURA Teppei

Last updated: Sep 22, 2019 at 23:14

Name	SHIMAMURA Teppei
E-mail	shimamuramed.nagoya-u.ac.jp
Affiliation	Nagoya University

Research Interests

Omics(25) , Next Generation Sequencer(16) , Systems Biology(48) , Bioinformatics(263) , Statistics(171)

Research Areas

Informatics / Life/Health/Medical informatics /
Genome science / System genome science /

Academic & Professional Experience

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Jun 2019

Today

Professor, Division of Systems Biology, Nagoya University Graduate School of Medicine

Apr 2014

May 2019

Designated Associate Professor, Division of Systems Biology, Nagoya University Graduate School of Medicine

Aug 2011

Mar 2014

Assistant Professor, Laboratory of DNA Information Analysis, Institute of Medical Science, The University of Tokyo

Apr 2010

Aug 2011

Project Assistant Professor, Laboratory of DNA Information Analysis, Institute of Medical Science, The University of Tokyo

Apr 2007

Mar 2010

Postdoctoral Fellow, Laboratory of DNA Information Analysis, Institute of Medical Science, The University of Tokyo

Education

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Apr 2004

Mar 2007

Graduate School of Information Science, Hokkaido University

Apr 2002

Mar 2004

Graduate School of Engineering, Hokkaido University

Apr 1998

Mar 2002

School of Engineering, Hokkaido University

Awards & Honors

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Dec 2011

Japanese Society for Bioinformatics Prize Winners, Japanese Society for Bioinformatics

Published Papers

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Replication stress triggers microsatellite destabilization and hypermutation leading to clonal expansion in vitro.

Matsuno Y, Atsumi Y, Shimizu A, Katayama K, Fujimori H, Hyodo M, Minakawa Y, Nakatsu Y, Kaneko S, Hamamoto R, Shimamura T, Miyano S, Tsuzuki T, Hanaoka F, Yoshioka KI

Nature communications 10(1) 3925 Sep 2019 [Refereed]

Divergent lncRNA MYMLR regulates MYC by eliciting DNA looping and promoter-enhancer interaction.

Kajino T, Shimamura T, Gong S, Yanagisawa K, Ida L, Nakatochi M, Griesing S, Shimada Y, Kano K, Suzuki M, Miyano S, Takahashi T

The EMBO journal 38(17) e98441 Sep 2019 [Refereed]

Meflin-positive cancer-associated fibroblasts inhibit pancreatic carcinogenesis.

Mizutani Y, Kobayashi H, Iida T, Asai N, Masamune A, Hara A, Esaki N, Ushida K, Mii S, Shiraki Y, Ando K, Weng L, Ishihara S, Ponik SM, Conklin MW, Haga H, Nagasaka A, Miyata T, Matsuyama M, Kobayashi T, Fujii T, Yamada S, Yamaguchi J, Wang T, Woods SL, Worthley D, Shimamura T, Fujishiro M, Hirooka Y, Takahashi M, Enomoto A

Cancer research Aug 2019 [Refereed]

Pathogenic Epigenetic Consequences of Genetic Alterations in IDH-wild-type Diffuse Astrocytic Gliomas.

Ohka F, Shinjo K, Deguchi S, Matsui Y, Okuno Y, Katsushima K, Suzuki M, Kato A, Ogiso N, Yamamichi A, Aoki K, Suzuki H, Sato S, Arul Rayan N, Prabhakar S, Göke J, Shimamura T, Maruyama R, Takahashi S, Suzumura A, Kimura H, Wakabayashi T, Zong H, Natsume A, Kondo Y

Cancer research Aug 2019 [Refereed]

ENIGMA: An Enterotype-Like Unigram Mixture Model for Microbial Association Analysis

Abe K, Hirayama H, Ohno K, Shimamura T

BMC Genomics. in press 20(Suppl 2) 191 Apr 2019 [Refereed]

Association Memberships

THE JAPANESE CANCER ASSOCIATION(1345) , THE MOLECULAR BIOLOGY SOCIETY OF JAPAN(2579) , JAPANESE SOCIETY FOR BIOINFORMATICS(106) , JAPANESE SOCIETY OF COMPUTATIONAL STATISTICS(85)