Although the cichlid fishes from Lake Tanganyika are treated as a textbook example of adaptive radiation, many taxonomic problems remain unresolved. <italic>Cyathopharynx furcifer</italic>, which belongs to the currently monospecific genus <italic>Cyathopharynx</italic>, contains two colour morphs at the southern end of the lake: one has a yellow anal fin, and the other has a black anal fin. Some books for hobbyists of ornamental fish treat these morphs as different species, but taxonomic studies have neither mentioned the existence nor addressed the status of these colour morphs. In the present paper, we analysed these two colour morphs using mitochondrial, microsatellite, morphometric, and meristic data sets. Both molecular and morphological data allowed clear discrimination between these morphs, suggesting the existence of two distinct sympatric species. Three taxonomic species have been described in this genus, and only <italic>C. furcifer</italic> is currently considered valid. Observations of type specimens of these three nominal species will be needed to determine the scientific names of these colour morphs.