論文

査読有り
2015年3月

Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53

PLOS GENETICS
  • Kristina Kirschner
  • Shamith A. Samarajiwa
  • Jonathan M. Cairns
  • Suraj Menon
  • Pedro A. Perez-Mancera
  • Kosuke Tomimatsu
  • Camino Bermejo-Rodriguez
  • Yoko Ito
  • Tamir Chandra
  • Masako Narita
  • Scott K. Lyons
  • Andy G. Lynch
  • Hiroshi Kimura
  • Tetsuya Ohbayashi
  • Simon Tavare
  • Masashi Narita
  • 全て表示

11
3
開始ページ
e1005053
終了ページ
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1371/journal.pgen.1005053
出版者・発行元
PUBLIC LIBRARY SCIENCE

The downstream functions of the DNA binding tumor suppressor p53 vary depending on the cellular context, and persistent p53 activation has recently been implicated in tumor suppression and senescence. However, genome-wide information about p53-target gene regulation has been derived mostly from acute genotoxic conditions. Using ChIP-seq and expression data, we have found distinct p53 binding profiles between acutely activated (through DNA damage) and chronically activated (in senescent or pro-apoptotic conditions) p53. Compared to the classical 'acute' p53 binding profile, 'chronic' p53 peaks were closely associated with CpG-islands. Furthermore, the chronic CpG-island binding of p53 conferred distinct expression patterns between senescent and pro-apoptotic conditions. Using the p53 targets seen in the chronic conditions together with external high-throughput datasets, we have built p53 networks that revealed extensive self-regulatory 'p53 hubs' where p53 and many p53 targets can physically interact with each other. Integrating these results with public clinical datasets identified the cancer-associated lipogenic enzyme, SCD, which we found to be directly repressed by p53 through the CpG-island promoter, providing a mechanistic link between p53 and the 'lipogenic phenotype', a hallmark of cancer. Our data reveal distinct phenotype associations of chronic p53 targets that underlie specific gene regulatory mechanisms.

リンク情報
DOI
https://doi.org/10.1371/journal.pgen.1005053
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000352197100041&DestApp=WOS_CPL
ID情報
  • DOI : 10.1371/journal.pgen.1005053
  • ISSN : 1553-7404
  • Web of Science ID : WOS:000352197100041

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