豊田 敦

J-GLOBALへ         更新日: 17/12/14 14:57
 
アバター
研究者氏名
豊田 敦
 
トヨダ アツシ
ハンドル
Toyoda Atsushi
URL
http://kaken.nii.ac.jp/ja/r/10267495
所属
国立遺伝学研究所
部署
生命情報研究センター

研究分野

 
 

論文

 
Kadowaki M, Fujimaru Y, Taguchi S, Ferdouse J, Sawada K, Kimura Y, Terasawa Y, Agrimi G, Anai T, Noguchi H, Toyoda A, Fujiyama A, Akao T, Kitagaki H
Applied and environmental microbiology   83(24)    2017年12月   [査読有り]
Kudoh T, Takahashi M, Osabe T, Toyoda A, Hirakawa H, Suzuki Y, Ohmido N, Onodera Y
Molecular genetics and genomics : MGG      2017年12月   [査読有り]
Yu L, Hisatsune J, Hirakawa H, Mizumachi E, Toyoda A, Yahara K, Sugai M
Genome announcements   5(41)    2017年10月   [査読有り]
Yamazaki T, Ichihara K, Suzuki R, Oshima K, Miyamura S, Kuwano K, Toyoda A, Suzuki Y, Sugano S, Hattori M, Kawano S
Scientific reports   7(1) 11679   2017年9月   [査読有り]
Minamikawa MF, Nonaka K, Kaminuma E, Kajiya-Kanegae H, Onogi A, Goto S, Yoshioka T, Imai A, Hamada H, Hayashi T, Matsumoto S, Katayose Y, Toyoda A, Fujiyama A, Nakamura Y, Shimizu T, Iwata H
Scientific reports   7(1) 4721   2017年7月   [査読有り]
Arai R, Sugawara T, Sato Y, Minakuchi Y, Toyoda A, Nabeshima K, Kimura H, Kimura A
Scientific reports   7(1) 3631   2017年6月   [査読有り]
Pramono AK, Kuwahara H, Itoh T, Toyoda A, Yamada A, Hongoh Y
Microbes and environments   32(2) 112-117   2017年6月   [査読有り]
Hayatsu M, Tago K, Uchiyama I, Toyoda A, Wang Y, Shimomura Y, Okubo T, Kurisu F, Hirono Y, Nonaka K, Akiyama H, Itoh T, Takami H
The ISME journal   11(5) 1130-1141   2017年5月   [査読有り]
Inagaki S, Takahashi M, Hosaka A, Ito T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T
The EMBO journal   36(8) 970-980   2017年4月   [査読有り]
Takami H, Toyoda A, Uchiyama I, Itoh T, Takaki Y, Arai W, Nishi S, Kawai M, Shin-Ya K, Ikeda H
DNA research : an international journal for rapid publication of reports on genes and genomes   24(2) 169-177   2017年4月   [査読有り]
Ishikawa A, Kusakabe M, Yoshida K, Ravinet M, Makino T, Toyoda A, Fujiyama A, Kitano J
Evolution; international journal of organic evolution   71(3) 565-581   2017年3月   [査読有り]
Takako Mochizuki, Yasuhiro Tanizawa, Takatomo Fujisawa, Tazro Ohta, Naruo Nikoh, Tokurou Shimizu, Atsushi Toyoda, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura
PLoS ONE   12    2017年2月
© 2017 Mochizuki et al. With the rapid advances in next-generation sequencing (NGS), datasets for DNA polymorphisms among various species and strains have been produced, stored, and distributed. However, reliability varies among these datasets bec...
Kikuchi A, Nakazato T, Ito K, Nojima Y, Yokoyama T, Iwabuchi K, Bono H, Toyoda A, Fujiyama A, Sato R, Tabunoki H
BMC genomics   18(1) 83   2017年1月   [査読有り]
Akter A, Ooka T, Gotoh Y, Yamamoto S, Fujita H, Terasoma F, Kida K, Taira M, Nakadouzono F, Gokuden M, Hirano M, Miyashiro M, Inari K, Shimazu Y, Tabara K, Toyoda A, Yoshimura D, Itoh T, Kitano T, Sato MP, Katsura K, Mondal SI, Ogura Y, Ando S, Hayashi T
Genome biology and evolution   9(1) 124-133   2017年1月   [査読有り]
Tsuchida S, Maruyama F, Ogura Y, Toyoda A, Hayashi T, Okuma M, Ushida K
Frontiers in microbiology   8 1540   2017年   [査読有り]
Okahata M, Ohta A, Mizutani H, Minakuchi Y, Toyoda A, Kuhara A
Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology   186(8) 985-998   2016年12月   [査読有り]
Hori T, Kagawa N, Toyoda A, Fujiyama A, Misu S, Monma N, Makino F, Ikeo K, Fukagawa T
The Journal of cell biology   216(1) 101-113   2016年12月   [査読有り]
Shang WH, Hori T, Westhorpe FG, Godek KM, Toyoda A, Misu S, Monma N, Ikeo K, Carroll CW, Takami Y, Fujiyama A, Kimura H, Straight AF, Fukagawa T
Nature communications   7 13465   2016年11月   [査読有り]
Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin-I T, Minakuchi Y, Koda Y, Nagano AJ, Yasugi M, Honjo MN, Kudoh H, Seki M, Kamiya A, Shiraki T, Carninci P, Asamizu E, Nishide H, Tanaka S, Park KI, Morita Y, Yokoyama K, Uchiyama I, Tanaka Y, Tabata S, Shinozaki K, Hayashizaki Y, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Iida S, Sakakibara Y
Nature communications   7 13295   2016年11月   [査読有り]
Shimizu T, Kitajima A, Nonaka K, Yoshioka T, Ohta S, Goto S, Toyoda A, Fujiyama A, Mochizuki T, Nagasaki H, Kaminuma E, Nakamura Y
PloS one   11(11) e0166969   2016年11月   [査読有り]
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS
Nature   538(7625) 336-343   2016年10月   [査読有り]
Kusakabe M, Ishikawa A, Ravinet M, Yoshida K, Makino T, Toyoda A, Fujiyama A, Kitano J
Molecular ecology   26(1) 304-319   2016年10月   [査読有り]
Hashimoto T, Horikawa DD, Saito Y, Kuwahara H, Kozuka-Hata H, Shin-I T, Minakuchi Y, Ohishi K, Motoyama A, Aizu T, Enomoto A, Kondo K, Tanaka S, Hara Y, Koshikawa S, Sagara H, Miura T, Yokobori S, Miyagawa K, Suzuki Y, Kubo T, Oyama M, Kohara Y, Fujiyama A, Arakawa K, Katayama T, Toyoda A, Kunieda T
Nature communications   7 12808   2016年9月   [査読有り]
Yoshida K, Go Y, Kushima I, Toyoda A, Fujiyama A, Imai H, Saito N, Iriki A, Ozaki N, Isoda M
Science advances   2(9) e1600558   2016年9月   [査読有り]
Yoshida M, Nakanaga K, Ogura Y, Toyoda A, Ooka T, Kazumi Y, Mitarai S, Ishii N, Hayashi T, Hoshino Y
Genome announcements   4(5)    2016年9月   [査読有り]
Ryogo Suzuki, Shuhei Ota, Tomokazu Yamazaki, Atsushi Toyoda, Satoko Nonaka, Chiaki Matsukura, Kazuyoshi Kuwano, Shigeyuki Kawano
Phycological Research   64 176-184   2016年7月
© 2016 Japanese Society of Phycology.A giant mitochondrion that branches and connects as a single mitochondrion in a cell has been observed during specific phases of the cell cycle of unicellular green algae, but has not been observed in multicell...
Nakai R, Fujisawa T, Nakamura Y, Nishide H, Uchiyama I, Baba T, Toyoda A, Fujiyama A, Naganuma T, Niki H
Genome announcements   4(3)    2016年6月   [査読有り]
Hamaji T, Mogi Y, Ferris PJ, Mori T, Miyagishima S, Kabeya Y, Nishimura Y, Toyoda A, Noguchi H, Fujiyama A, Olson BJ, Marriage TN, Nishii I, Umen JG, Nozaki H
G3 (Bethesda, Md.)   6(5) 1179-1189   2016年5月   [査読有り]
Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ
Nature communications   7 11370   2016年4月   [査読有り]
Yoshida K, Miyagi R, Mori S, Takahashi A, Makino T, Toyoda A, Fujiyama A, Kitano J
Ecology and evolution   6(7) 2190-2204   2016年3月   [査読有り]
Izutsu M, Toyoda A, Fujiyama A, Agata K, Fuse N
G3 (Bethesda, Md.)   6(2) 365-376   2015年12月   [査読有り]
Tomokazu Yamazaki, Mikiya Endo, Kan Ito, Ryogo Suzuki, Shuhei Ota, Kazuyoshi Kuwano, Shinichi Miyamura, Atsushi Toyoda, Shigeyuki Kawano
Cytologia   79 575-584   2014年1月
Gamete fusion or fertilization is one of the most important steps in sexual reproduction. HAP2/GCS1 is a potential gamete membrane fusion component. We analyzed whole genome sequences of two strains with opposite mating types (mt- and mt+) in the ...
Ryogo Suzuki, Tomokazu Yamazaki, Atsushi Toyoda, Shigeyuki Kawano
Cytologia   79 427-428   2014年1月
Junichi Watanabe, Masahira Hattori, Matthew Berriman, Michael J. Lehane, Neil Hall, Neil Hall, Philippe Solano, Serap Aksoy, Winston Hide, Winston Hide, Yeya Touré, Geoffrey M. Attardo, Alistair C. Darby, Atsushi Toyoda, Christiane Hertz-Fowler, Denis M. Larkin, James A. Cotton, Mandy J. Sanders, Martin T. Swain, Michael A. Quail, Noboru Inoue, Sophie Ravel, Todd D. Taylor, Tulika P. Srivastava, Tulika P. Srivastava, Vineet Sharma, Vineet Sharma, Wesley Warren, Richard K. Wilson, Yutaka Suzuki, Daniel Lawson, Daniel S.T. Hughes, Karyn Megy, Daniel K. Masiga, Paul O. Mireji, Immo A. Hansen, Jan Van Den Abbeele, Joshua B. Benoit, Joshua B. Benoit, Kostas Bourtzis, Kostas Bourtzis, Kostas Bourtzis, George F.O. Obiero, George F.O. Obiero, Hugh M. Robertson, Jeffery W. Jones, Jing Jiang Zhou, Linda M. Field, Markus Friedrich, Steven R.G. Nyanjom, Erich L. Telleria, Guy Caljon, José M.C. Ribeiro, Alvaro Acosta-Serrano, Alvaro Acosta-Serrano, Cher Pheng Ooi, Clair Rose, David P. Price, Lee R. Haines, Alan Christoffels, Cheolho Sim, Daphne Q.D. Pham, David L. Denlinger, Dawn L. Geiser, Irene A. Omedo, Joy J. Winzerling, Justin T. Peyton, Kevin K. Marucha, Mario Jonas, Megan E. Meuti, Neil D. Rawlings, Qirui Zhang, Rosaline W. Macharia, Rosaline W. Macharia, Veronika Michalkova, Veronika Michalkova, Zahra Jalali Sefid Dashti, Aaron A. Baumann, Gerd Gäde, Heather G. Marco, Jelle Caers, Liliane Schoofs, Michael A. Riehle, Wanqi Hu, Zhijian Tu, Aaron M. Tarone, Anna R. Malacrida, Caleb K. Kibet, Francesca Scolari, Jacobus J.O. Koekemoer, Jacobus J.O. Koekemoer, Judith Willis, Ludvik M. Gomulski, Marco Falchetto, Maxwell J. Scott, Shuhua Fu, Sing Hoi Sze, Thiago Luiz, Brian Weiss, Deirdre P. Walshe
Science   344 380-386   2014年1月
Tsetse flies are the sole vectors of human African trypanosomiasis throughout sub-Saharan Africa. Both sexes of adult tsetse feed exclusively on blood and contribute to disease transmission. Notable differences between tsetse and other disease vec...
Yuji Takahashi, Yoko Fukuda, Jun Yoshimura, Atsushi Toyoda, Kari Kurppa, Kari Kurppa, Hiroyoko Moritoyo, Veronique V. Belzil, Patrick A. Dion, Patrick A. Dion, Koichiro Higasa, Koichiro Doi, Hiroyuki Ishiura, Jun Mitsui, Hidetoshi Date, Budrul Ahsan, Takashi Matsukawa, Yaeko Ichikawa, Takashi Moritoyo, Mayumi Ikoma, Tsukasa Hashimoto, Fumiharu Kimura, Shigeo Murayama, Osamu Onodera, Masatoyo Nishizawa, Mari Yoshida, Naoki Atsuta, Gen Sobue, Ja Cals, Jennifer A. Fifita, Jennifer A. Fifita, Jennifer A. Fifita, Kelly L. Williams, Kelly L. Williams, Kelly L. Williams, Ian P. Blair, Ian P. Blair, Ian P. Blair, Garth A. Nicholson, Garth A. Nicholson, Paloma Gonzalez-Perez, Robert H. Brown, Masahiro Nomoto, Klaus Elenius, Klaus Elenius, Guy A. Rouleau, Guy A. Rouleau, Guy A. Rouleau, Asao Fujiyama, Shinichi Morishita, Jun Goto, Shoji Tsuji, Shoji Tsuji
American Journal of Human Genetics   93 900-905   2013年11月
Amyotrophic lateral sclerosis (ALS) is a devastating neurological disorder characterized by the degeneration of motor neurons and typically results in death within 3-5 years from onset. Familial ALS (FALS) comprises 5%-10% of ALS cases, and the id...
Toyoyuki Takada, Toyoyuki Takada, Toshinobu Ebata, Toshinobu Ebata, Hideki Noguchi, Thomas M. Keane, David J. Adams, Takanori Narita, Tadasu Shin-I, Tadasu Shin-I, Hironori Fujisawa, Hironori Fujisawa, Atsushi Toyoda, Kuniya Abe, Yuichi Obata, Yoshiyuki Sakaki, Yoshiyuki Sakaki, Kazuo Moriwaki, Asao Fujiyama, Yuji Kohara, Toshihiko Shiroishi, Toshihiko Shiroishi
Genome Research   23 1329-1338   2013年8月
Commonly used classical inbred mouse strains have mosaic genomes with sequences from different subspecific origins. Their genomes are derived predominantly from the Western European subspecies Mus musculus domesticus, with the remaining sequences ...
Koh Aoki, Koh Aoki, Yoshiyuki Ogata, Kaori Igarashi, Kentaro Yano, Hideki Nagasaki, Eli Kaminuma, Atsushi Toyoda
Breeding Science   63 14-20   2013年4月
Completion of tomato genome sequencing project has broad impacts on genetic and genomic studies of tomato and Solanaceae plants. The reference genome sequence derived from Solanum lycopersicum cv 'Heinz 1706' serves as the firm basis for sequencin...
Kyoko Hayashida, Yuichiro Hara, Takashi Abe, C. Y. Chisato Yamasaki, Atsushi Toyoda, Takehide Kosuge, Yutaka Suzuki, Yoshiharu Sato, Shuichi Kawashima, Toshiaki Katayama, Hiroyuki Wakaguri, N. I. Noboru Inoue, K. H. Keiichi Homma, Masahito Tada-Umezaki, Yukio Yagi, Y. F. Yasuyuki Fujii, T. H. Takuya Habara, Minoru Kanehisa, H. W. Hidemi Watanabe, Kimihito Ito, Takashi Gojobori, Takashi Gojobori, H. S. Hideaki Sugawara, Tadashi Imanishi, William Weir, Malcolm Gardner, A. P. Arnab Pain, Brian Shiels, Masahira Hattori, Vishvanath Nene, Chihiro Sugimoto
mBio   3    2012年11月
We sequenced the genome of Theileria orientalis, a tick-borne apicomplexan protozoan parasite of cattle. The focus of this study was a comparative genome analysis of T. orientalis relative to other highly pathogenic Theileria species, T. parva and...
Hideki Hirakawa, Suguru Tsuchimoto, Hiroe Sakai, Shinobu Nakayama, Tsunakazu Fujishiro, Yoshie Kishida, Mitsuyo Kohara, Akiko Watanabe, Manabu Yamada, Tomoyuki Aizu, Atsushi Toyoda, Asao Fujiyama, Asao Fujiyama, Satoshi Tabata, Kiichi Fukui, Shusei Sato
Plant Biotechnology   29 123-130   2012年8月
In order to upgrade the genome sequence information of J. curcas L., we integrated de novo assembly of a total of 537 million paired-end reads generated from the Illumina sequencing platform into the current genome assembly which was obtained by a...
Marilyn B. Renfree, Marilyn B. Renfree, Anthony T. Papenfuss, Anthony T. Papenfuss, Anthony T. Papenfuss, Janine E. Deakin, Janine E. Deakin, James Lindsay, Thomas Heider, Katherine Belov, Katherine Belov, Willem Rens, Paul D. Waters, Paul D. Waters, Elizabeth A. Pharo, Geoff Shaw, Geoff Shaw, Emily S.W. Wong, Emily S.W. Wong, Christophe M. Lefèvre, Kevin R. Nicholas, Yoko Kuroki, Matthew J. Wakefield, Matthew J. Wakefield, Kyall R. Zenger, Kyall R. Zenger, Kyall R. Zenger, Chenwei Wang, Chenwei Wang, Malcolm Ferguson-Smith, Frank W. Nicholas, Danielle Hickford, Danielle Hickford, Hongshi Yu, Hongshi Yu, Kirsty R. Short, Hannah V. Siddle, Hannah V. Siddle, Stephen R. Frankenberg, Stephen R. Frankenberg, Keng Y. Chew, Keng Y. Chew, Brandon R. Menzies, Brandon R. Menzies, Brandon R. Menzies, Jessica M. Stringer, Jessica M. Stringer, Shunsuke Suzuki, Shunsuke Suzuki, Timothy A. Hore, Timothy A. Hore, Margaret L. Delbridge, Margaret L. Delbridge, Hardip Patel, Hardip Patel, Amir Mohammadi, Amir Mohammadi, Nanette Y. Schneider, Nanette Y. Schneider, Nanette Y. Schneider, Yanqiu Hu, Yanqiu Hu, William O'Hara, Shafagh Al Nadaf, Shafagh Al Nadaf, Chen Wu, Zhi Ping Feng, Zhi Ping Feng, Benjamin G. Cocks, Jianghui Wang, Paul Flicek, Stephen M.J. Searle, Susan Fairley, Kathryn Beal, Javier Herrero, Dawn M. Carone, Dawn M. Carone, Yutaka Suzuki, Sumio Sugano, Atsushi Toyoda, Yoshiyuki Sakaki, Shinji Kondo, Yuichiro Nishida, Shoji Tatsumoto, Ion Mandiou, Arthur Hsu, Arthur Hsu, Kaighin A. McColl, Benjamin Lansdell, George Weinstock, Elizabeth Kuczek, Elizabeth Kuczek, Elizabeth Kuczek, Elizabeth Kuczek, Annette McGrath, Annette McGrath, Peter Wilson, Peter Wilson, Artem Men, Artem Men
Genome Biology   12    2011年12月
Shunji Takahashi, Atsushi Toyoda, Yasuyo Sekiyama, Hiroshi Takagi, Toshihiko Nogawa, Masakazu Uramoto, Ryuichiro Suzuki, Hiroyuki Koshino, Takuto Kumano, Suresh Panthee, Tohru Dairi, Jun Ishikawa, Haruo Ikeda, Yoshiyuki Sakaki, Hiroyuki Osada
Nature Chemical Biology   7 461-468   2011年1月
Spiroacetal compounds are ubiquitous in nature, and their stereospecific structures are responsible for diverse pharmaceutical activities. Elucidation of the biosynthetic mechanisms that are involved in spiroacetal formation will open the door to ...
Shin ichi Chisada, Hiroyuki Okamoto, Yoshihito Taniguchi, Yoshitaka Kimori, Atsushi Toyoda, Yoshiyuki Sakaki, Shunichi Takeda, Yasutoshi Yoshiura
Developmental Biology   359 82-94   2011年1月
Myostatin (MSTN) functions as a negative regulator of skeletal muscle mass. In mammals, MSTN-deficient animals result in an increase of skeletal muscle mass with both hyperplasia and hypertrophy. A MSTN gene is highly conserved within the fish spe...
[Next generation sequencing].
Toyoda A, Fujiyama A
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme   54(10) 1271-1275   2009年8月   [査読有り]
Hiroshi Sudo, Hiroshi Sudo, Hikaru Seki, Hikaru Seki, Nozomu Sakurai, Hideyuki Suzuki, Daisuke Shibata, Atsushi Toyoda, Yasushi Totoki, Yoshiyuki Sakaki, Osamu Lida, Toshiro Shibata, Mareshige Kojoma, Toshiya Muranaka, Toshiya Muranaka, Kazuki Saito, Kazuki Saito
Plant Biotechnology   26 105-107   2009年6月
Glycyrrhiza uralensis (Leguminosae, Fabaceae) is the most important medicinal plant used as a natural sweetener, in Chinese herbal medicines, and as a tobacco flavoring agent. Here, we report the generation of 56,857 expressed sequence tags (ESTs)...
Etsuko Araki, Tatsuya M. Ikeda, Yasunari Ohgihara, Atsushi Toyoda, Hiroshi Yano
Breeding Science   58 121-128   2008年7月
We isolated transformation-competent artificial chromosome (TAC) clones harboring a high-molecular-weight glutenin subunit (HMW-GS) gene and a low-molecular-weight GS (LMW-GS) gene from wheat genomic DNA, and developed transgenic rice lines with t...
Nomura T, Nasuda S, Kawaura K, Ogihara Y, Kato N, Sato F, Kojima T, Toyoda A, Iwamura H, Endo TR
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik   116(3) 373-381   2008年2月   [査読有り]
Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto S, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL
Science (New York, N.Y.)   319(5859) 64-69   2008年1月   [査読有り]
Takahashi H, Kamiya A, Ishiguro A, Suzuki AC, Saitou N, Toyoda A, Aruga J
Molecular biology and evolution   25(1) 69-82   2008年1月   [査読有り]
Ahsan B, Kobayashi D, Yamada T, Kasahara M, Sasaki S, Saito TL, Nagayasu Y, Doi K, Nakatani Y, Qu W, Jindo T, Shimada A, Naruse K, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Kohara Y, Morishita S
Nucleic acids research   36(Database issue) D747-52   2008年1月   [査読有り]
Sakurai T, Plata G, Rodríguez-Zapata F, Seki M, Salcedo A, Toyoda A, Ishiwata A, Tohme J, Sakaki Y, Shinozaki K, Ishitani M
BMC plant biology   7 66   2007年12月   [査読有り]
Nanjo T, Sakurai T, Totoki Y, Toyoda A, Nishiguchi M, Kado T, Igasaki T, Futamura N, Seki M, Sakaki Y, Shinozaki K, Shinohara K
BMC genomics   8 448   2007年12月   [査読有り]
Aruga J, Yoshikawa F, Nozaki Y, Sakaki Y, Toyoda A, Furuichi T
Journal of neurochemistry   102(5) 1533-1547   2007年9月   [査読有り]
Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, Toyoda A, Takami H, Morita H, Sharma VK, Srivastava TP, Taylor TD, Noguchi H, Mori H, Ogura Y, Ehrlich DS, Itoh K, Takagi T, Sakaki Y, Hayashi T, Hattori M
DNA research : an international journal for rapid publication of reports on genes and genomes   14(4) 169-181   2007年8月   [査読有り]
Sugaya N, Ikeda K, Tashiro T, Takeda S, Otomo J, Ishida Y, Shiratori A, Toyoda A, Noguchi H, Takeda T, Kuhara S, Sakaki Y, Iwayanagi T
BMC pharmacology   7 10   2007年8月   [査読有り]
Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K, Kasai Y, Jindo T, Kobayashi D, Shimada A, Toyoda A, Kuroki Y, Fujiyama A, Sasaki T, Shimizu A, Asakawa S, Shimizu N, Hashimoto S, Yang J, Lee Y, Matsushima K, Sugano S, Sakaizumi M, Narita T, Ohishi K, Haga S, Ohta F, Nomoto H, Nogata K, Morishita T, Endo T, Shin-I T, Takeda H, Morishita S, Kohara Y
Nature   447(7145) 714-719   2007年6月   [査読有り]
J. Ohashi, J. Ohashi, I. Naka, A. Toyoda, M. Takasu, K. Tokunaga, T. Ishida, Y. Sakaki, H. Hohjoh, H. Hohjoh
Tissue Antigens   68 427-431   2006年11月
To estimate the species-specific mutation rates at the DRB1 locus in humans and chimpanzee, we analyzed the nucleotide sequence of a 37.6-kb chimpanzee chromosomal segment containing the entire Patr-DRB1*0701 allele and the flanking nongenic regio...
Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, Ito T
Proceedings of the National Academy of Sciences of the United States of America   103(47) 17846-17851   2006年11月   [査読有り]
Sasaki T, Ryan PR, Delhaize E, Hebb DM, Ogihara Y, Kawaura K, Noda K, Kojima T, Toyoda A, Matsumoto H, Yamamoto Y
Plant & cell physiology   47(10) 1343-1354   2006年10月   [査読有り]
Yoko Kuroki, Todd D. Taylor, Hideki Noguchi, Hideki Noguchi, Takehiko Ito, Atsushi Toyoda, Yoshiyuki Sakaki, Asao Fujiyama
Nature Genetics   38 854-855   2006年8月
H. A. Vu, H. A. Vu, P. T. Xinh, P. T. Xinh, M. Masuda, T. Motoji, A. Toyoda, Y. Sakaki, K. Tokunaga, Y. Sato
Leukemia   20 1414-1421   2006年8月
The FMS-like tyrosine kinase 3 (FLT3) gene, belonging to the receptor tyrosine kinase (TK) subclass III family, plays an important role in normal hematopoiesis and is one of the most frequently mutated genes in hematologic malignancies as well as ...
Aruga J, Kamiya A, Takahashi H, Fujimi TJ, Shimizu Y, Ohkawa K, Yazawa S, Umesono Y, Noguchi H, Shimizu T, Saitou N, Mikoshiba K, Sakaki Y, Agata K, Toyoda A
Genomics   87(6) 783-792   2006年6月   [査読有り]
Taylor TD, Noguchi H, Totoki Y, Toyoda A, Kuroki Y, Dewar K, Lloyd C, Itoh T, Takeda T, Kim DW, She X, Barlow KF, Bloom T, Bruford E, Chang JL, Cuomo CA, Eichler E, FitzGerald MG, Jaffe DB, LaButti K, Nicol R, Park HS, Seaman C, Sougnez C, Yang X, Zimmer AR, Zody MC, Birren BW, Nusbaum C, Fujiyama A, Hattori M, Rogers J, Lander ES, Sakaki Y
Nature   440(7083) 497-500   2006年3月   [査読有り]
Kuroki Y, Toyoda A, Noguchi H, Taylor TD, Itoh T, Kim DS, Kim DW, Choi SH, Kim IC, Choi HH, Kim YS, Satta Y, Saitou N, Yamada T, Morishita S, Hattori M, Sakaki Y, Park HS, Fujiyama A
Nature genetics   38(2) 158-167   2006年2月   [査読有り]
Taniguchi Y, Takeda S, Furutani-Seiki M, Kamei Y, Todo T, Sasado T, Deguchi T, Kondoh H, Mudde J, Yamazoe M, Hidaka M, Mitani H, Toyoda A, Sakaki Y, Plasterk RH, Cuppen E
Genome biology   7(12) R116   2006年   [査読有り]
[Comparative studies on human and chimpanzee genomes].
Yoko K, Atsushi T, Hideki N, Asao F
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme   50(16 Suppl) 2072-2077   2005年12月   [査読有り]
Osada T, Toyoda A, Moisyadi S, Akutsu H, Hattori M, Sakaki Y, Yanagimachi R
Molecular reproduction and development   72(3) 329-335   2005年11月   [査読有り]
Itoh T, Toyoda A, Taylor TD, Sakaki Y, Hattori M
Nature genetics   37(10) 1041-1043   2005年10月   [査読有り]
Sakuraba Y, Sezutsu H, Takahasi KR, Tsuchihashi K, Ichikawa R, Fujimoto N, Kaneko S, Nakai Y, Uchiyama M, Goda N, Motoi R, Ikeda A, Karashima Y, Inoue M, Kaneda H, Masuya H, Minowa O, Noguchi H, Toyoda A, Sakaki Y, Wakana S, Noda T, Shiroishi T, Gondo Y
Biochemical and biophysical research communications   336(2) 609-616   2005年10月   [査読有り]
Nusbaum C, Zody MC, Borowsky ML, Kamal M, Kodira CD, Taylor TD, Whittaker CA, Chang JL, Cuomo CA, Dewar K, FitzGerald MG, Yang X, Abouelleil A, Allen NR, Anderson S, Bloom T, Bugalter B, Butler J, Cook A, DeCaprio D, Engels R, Garber M, Gnirke A, Hafez N, Hall JL, Norman CH, Itoh T, Jaffe DB, Kuroki Y, Lehoczky J, Lui A, Macdonald P, Mauceli E, Mikkelsen TS, Naylor JW, Nicol R, Nguyen C, Noguchi H, O'Leary SB, O'Neill K, Piqani B, Smith CL, Talamas JA, Topham K, Totoki Y, Toyoda A, Wain HM, Young SK, Zeng Q, Zimmer AR, Fujiyama A, Hattori M, Birren BW, Sakaki Y, Lander ES
Nature   437(7058) 551-555   2005年9月   [査読有り]
Kawakami A, Nojima Y, Toyoda A, Takahoko M, Satoh M, Tanaka H, Wada H, Masai I, Terasaki H, Sakaki Y, Takeda H, Okamoto H
Current biology : CB   15(5) 480-488   2005年3月   [査読有り]
Yokomine T, Shirohzu H, Purbowasito W, Toyoda A, Iwama H, Ikeo K, Hori T, Mizuno S, Tsudzuki M, Matsuda Y, Hattori M, Sakaki Y, Sasaki H
Genome research   15(1) 154-165   2005年1月   [査読有り]
[Genome sequencing].
Toyoda A
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme   49(17 Suppl) 2620-2626   2004年12月   [査読有り]
Abe K, Noguchi H, Tagawa K, Yuzuriha M, Toyoda A, Kojima T, Ezawa K, Saitou N, Hattori M, Sakaki Y, Moriwaki K, Shiroishi T
Genome research   14(12) 2439-2447   2004年12月   [査読有り]
A 210-kb segment of tandem repeats and retroelements located between imprinted subdomains of mouse distal chromosome 7.
Shirohzu H, Yokomine T, Sato C, Kato R, Toyoda A, Purbowasito W, Suda C, Mukai T, Hattori M, Okumura K, Sakaki Y, Sasaki H
DNA research : an international journal for rapid publication of reports on genes and genomes   11(5) 325-334   2004年10月   [査読有り]
Genomic organization and promoter analysis of the Dnmt3b gene.
Ishida C, Ura K, Hirao A, Sasaki H, Toyoda A, Sakaki Y, Niwa H, Li E, Kaneda Y
Gene   310 151-159   2003年5月   [査読有り]
Xinh PT, Tri NK, Nagao H, Nakazato H, Taketazu F, Fujisawa S, Yagasaki F, Chen YZ, Hayashi Y, Toyoda A, Hattori M, Sakaki Y, Tokunaga K, Sato Y
Genes, chromosomes & cancer   36(3) 313-316   2003年3月   [査読有り]
Tri NK, Xinh PT, Nagao H, Izumi T, Ozawa K, Toyoda A, Hattori M, Sakaki Y, Tokunaga K, Sato Y
Genes, chromosomes & cancer   35(4) 365-367   2002年12月   [査読有り]
Toyoda A, Noguchi H, Taylor TD, Ito T, Pletcher MT, Sakaki Y, Reeves RH, Hattori M
Genome research   12(9) 1323-1332   2002年9月   [査読有り]
Identification of two novel primate-specific genes in DSCR.
Takamatsu K, Maekawa K, Togashi T, Choi DK, Suzuki Y, Taylor TD, Toyoda A, Sugano S, Fujiyama A, Hattori M, Sakaki Y, Takeda T
DNA research : an international journal for rapid publication of reports on genes and genomes   9(3) 89-97   2002年6月   [査読有り]
Fujiyama A, Watanabe H, Toyoda A, Taylor TD, Itoh T, Tsai SF, Park HS, Yaspo ML, Lehrach H, Chen Z, Fu G, Saitou N, Osoegawa K, de Jong PJ, Suto Y, Hattori M, Sakaki Y
Science (New York, N.Y.)   295(5552) 131-134   2002年1月   [査読有り]
Wakui K, Toyoda A, Kubota T, Hidaka E, Ishikawa M, Katsuyama T, Sakaki Y, Hattori M, Fukushima Y
Journal of human genetics   47(10) 511-516   2002年   [査読有り]
Y. Ichikawa, J. Goto, M. Hattori, A. Toyoda, K. Ishii, S. Y. Jeong, H. Hashida, N. Masuda, K. Ogata, F. Kasai, M. Hirai, P. Maciel, G. A. Rouleau, Y. Sakaki, I. Kanazawa
Journal of Human Genetics   46 413-422   2001年7月
Machado-Joseph disease (MJD) is an autosomal dominant neurodegenerative disorder that is clinically characterized by cerebellar ataxia and various associated symptoms. The disease is caused by an unstable expansion of the CAG repeat in the MJD gen...
Eric S. Lander, Lauren M. Linton, Bruce Birren, Chad Nusbaum, Michael C. Zody, Jennifer Baldwin, Keri Devon, Ken Dewar, Michael Doyle, William Fitzhugh, Roel Funke, Diane Gage, Katrina Harris, Andrew Heaford, John Howland, Lisa Kann, Jessica Lehoczky, Rosie Levine, Paul McEwan, Kevin McKernan, James Meldrim, Jill P. Mesirov, Cher Miranda, William Morris, Jerome Naylor, Christina Raymond, Mark Rosetti, Ralph Santos, Andrew Sheridan, Carrie Sougnez, Nicole Stange-Thomann, Nikola Stojanovic, Aravind Subramanian, Dudley Wyman, Jane Rogers, John Sulston, Rachael Ainscough, Stephan Beck, David Bentley, John Burton, Christopher Clee, Nigel Carter, Alan Coulson, Rebecca Deadman, Panos Deloukas, Andrew Dunham, Ian Dunham, Richard Durbin, Lisa French, Darren Grafham, Simon Gregory, Tim Hubbard, Sean Humphray, Adrienne Hunt, Matthew Jones, Christine Lloyd, Amanda McMurray, Lucy Matthews, Simon Mercer, Sarah Milne, James C. Mullikin, Andrew Mungall, Robert Plumb, Mark Ross, Ratna Shownkeen, Sarah Sims, Robert H. Waterston, Richard K. Wilson, Ladeana W. Hillier, John D. McPherson, Marco A. Marra, Elaine R. Mardis, Lucinda A. Fulton, Asif T. Chinwalla, Kymberlie H. Pepin, Warren R. Gish, Stephanie L. Chissoe, Michael C. Wendl, Kim D. Delehaunty, Tracie L. Miner, Andrew Delehaunty, Jason B. Kramer, Lisa L. Cook, Robert S. Fulton, Douglas L. Johnson, Patrick J. Minx, Sandra W. Clifton, Trevor Hawkins, Elbert Branscomb, Paul Predki, Paul Richardson, Sarah Wenning, Tom Slezak, Norman Doggett, Jan Fang Cheng, Anne Olsen, Susan Lucas, Christopher Elkin, Edward Uberbacher, Marvin Frazier
Nature   409 860-921   2001年2月
The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and make freely available a draft sequence of the hum...
John D. McPherson, Marco Marra, Marco Marra, La Deana Hillier, Robert H. Waterston, Asif Chinwalla, John Wallis, Mandeep Sekhon, Kristine Wylie, Elaine R. Mardis, Richard K. Wilson, Robert Fulton, Tamara A. Kucaba, Caryn Wagner-McPherson, William B. Barbazuk, Simon G. Gregory, Sean J. Humphray, Lisa French, Richard S. Evans, Graeme Bethel, Adam Whittaker, Jane L. Holden, Owen T. McCann, Andrew Dunham, Carol Soderlund, Carol Soderlund, Carol E. Scott, David R. Bentley, Gregory Schuler, Hsiu Chuan Chen, Wonhee Jang, Eric D. Green, Jacquelyn R. Idol, Valerie V.Braden Maduro, Kate T. Montgomery, Eunice Lee, Ashley Miller, Suzanne Emerling, Raju Kucherlapati, Richard Gibbs, Steve Scherer, J. Harley Gorrell, Erica Sodergren, Kerstin Clerc-Blankenburg, Paul Tabor, Susan Naylor, Dawn Garcia, J. de Jong, J. de Jong, J. de Jong, Joseph J. Catanese, Joseph J. Catanese, Joseph J. Catanese, Norma Nowak, Kazutoyo Osoegawa, Kazutoyo Osoegawa, Kazutoyo Osoegawa, Shizhen Qin, Lee Rowen, Anuradha Madan, Monica Dors, Leroy Hood, Barbara Trask, Cynthia Friedman, Hillary Massa, Vivian G. Cheung, Ilan R. Kirsch, Thomas Reid, Raluca Yonescu, Jean Weissenbach, Thomas Bruls, Roland Heilig, Elbert Branscomb, Anne Olsen, Norman Doggett, Jan Fang Cheng, Trevor Hawkins, Richard M. Myers, Jin Shang, Lucia Ramirez, Jeremy Schmutz, Olivia Velasquez, Kami Dixon, Nancy E. Stone, David R. Cox, David Haussler, David Haussler, W. James Kent, Terrence Furey, Sanja Rogic, Scot Kennedy, Steven Jones, André Rosenthal, Gaiping Wen, Markus Schilhabel, Gernot Gloeckner, Gerald Nyakatura, Gerald Nyakatura, Reiner Siebert, Brigitte Schlegelberger
Nature   409 934-941   2001年2月
The human genome is by far the largest genome to be sequenced, and its size and complexity present many challenges for sequence assembly. The International Human Genome Sequencing Consortium constructed a map of the whole genome to enable the sele...
Akira Nakagawara, Akira Nakagawara, Miki Ohira, Hajime Kageyama, Motohiro Mihara, Shigeyuki Furuta, Taiichi Machida, Hajime Takayasu, Ashraful Islam, Yohko Nakamura, Masato Takahashi, Tomotane Shishikura, Yasuhiko Kaneko, Atsushi Toyoda, Masahira Hattori, Yoshiyuki Sakaki, Misao Ohki, Akira Horii, Eiichi Soeda, Johji Inazawa, Naohiko Seki, Hidekazu Kuma, Iwao Nozawa, Shigeru Sakiyama
Medical and Pediatric Oncology   35 516-521   2000年12月
Background. We have identified for the first time a homozygously deleted region within the smallest region of overlap at 1p36.2-3 in two neuroblastoma cell lines. Procedure. The 800kb PAC contig covering the entire homozygously deleted region was ...
Tsuyoshi Sakai, Atsushi Toyoda, Katsuyuki Hashimoto, Hidekatsu Maeda
DNA Research   7 137-141   2000年12月
We have isolated and characterized a novel zinc finger gene by screening a human testis cDNA library. The isolated cDNA, termed ZNF219, contains an open reading frame of 2169 nucleotides encoding 723 amino acids. Sequence analysis revealed 9 sets ...
Miki Ohira, Hajime Kageyama, Motohiro Mihara, Shigeyuki Furuta, Taiichi Machida, Tomotane Shishikura, Hajime Takayasu, Ashraful Islam, Yohko Nakamura, Masato Takahashi, Nobumoto Tomioka, Shigeru Sakiyama, Yasuhiko Kaneko, Atsushi Toyoda, Masahira Hattori, Yoshiyuki Sakaki, Misao Ohki, Akira Horii, Eiichi Soeda, Johji Inazawa, Naohiko Seki, Hidekazu Kuma, Iwao Nozawa, Akira Nakagawara
Oncogene   19 4302-4307   2000年8月
Loss of heterozygosity of the distal region of chromosome 1p where tumor suppressor gene(s) might harbor is frequently observed in many human cancers including neuroblastoma (NBL) with MYCN amplification and poor prognosis. We have identified for ...
M. Hattori, A. Fujiyama, T. D. Taylor, H. Watanabe, T. Yada, H. S. Park, A. Toyoda, K. Ishii, Y. Totoki, D. K. Choi, E. Soeda, M. Ohki, T. Takagi, Y. Sakaki, Y. Sakaki, S. Taudien, K. Blechschmidt, A. Polley, U. Menzel, J. Delabar, K. Kumpf, R. Lehmann, D. Patterson, K. Reichwald, A. Rump, M. Schillhabel, A. Schudy, W. Zimmermann, A. Rosenthal, J. Kudoh, K. Shibuya, K. Kawasaki, S. Asakawa, A. Shintani, T. Sasaki, K. Nagamine, S. Mitsuyama, S. E. Antonarakis, S. Minoshima, N. Shimizu, G. Nordsiek, K. Homischer, P. Brandt, M. Scharfe, O. Schön, A. Desario, J. Reichelt, G. Kauer, H. Blöcker, J. Ramser, A. Beck, S. Klages, S. Hennig, L. Riesselmann, E. Dagand, T. Haaf, S. Wehrmeyer, K. Borzym, K. Gardiner, D. Nizetic, F. Francis, H. Lehrach, R. Reinhardt, M. L. Yaspo
Nature   405 311-319   2000年5月
Chromosome 21 is the smallest human autosome. An extra copy of chromosome 21 causes Down syndrome, the most frequent genetic cause of significant mental retardation, which affects up to 1 in 700 live births. Several anonymous loci for monogenic di...
J. Kusuda, J. Kusuda, M. Hirai, A. Toyoda, R. Tanuma, K. Hashimoto
Cytogenetics and Cell Genetics   83 101-103   1998年12月
Jun Kusuda, Momoki Hirai, Atsushi Toyoda, Reiko Tanuma, Aya Nomura-Kitabayashi, Katsuyuki Hashimoto
Gene   209 13-21   1998年3月
A sequence homologous to the transaldolase gene (TALDO) was identified in a polymorphic cosmid DNA mapped on human chromosome 11p15 by exon trapping with pSPL3. Analysis of lambda clones contiguous to the cosmid clone showed that the related gene ...
Hidekatsu Maeda, Kohhei Takata, Atsushi Toyoda, Kunihiko Shibata
Journal of Fermentation and Bioengineering   85 536-538   1998年1月
D-[1- 13 C]Glucose is useful for studies on tracing by means of 13 C- magnetic resonance imaging (MRI) the fate of a metabolite in the brain, and this technique is expected to become a sophisticated clinical tool for the diagnosis of neurological ...
Jun Kusuda, Momoki Hirai, Atsushi Toyoda, Katsuyuki Hashimoto, Katsuyuki Hashimoto
Genomics   40 378-381   1997年3月
Hidekatsu Maeda, Kohhei Takata, Atsushi Toyoda, Takashi Niitsu, Masanori Iwakura, Kunihiko Shibata
Journal of Fermentation and Bioengineering   83 113-115   1997年1月
13 C-labelled L-serine was efficiently produced from [ 13 C] formaldehyde and glycine by using partially purified L-serine hydroxymethyltransferase from Methylobacterium extorquens JCM 2804, tetrahydrofolate and a tetrahydrofolate regeneration sys...
Atsushi Toyoda, Tsuyoshi Sakai, Yoshikazu Sugiyama, Jun Kusuda, Katsuyuki Hashimoto, Hidekatsu Maeda
DNA Research   3 337-340   1996年1月
We screened potential promoter regions from NotI-linking cosmid clones mapped on human chromosome Xq28 region with our constructed trapping vector and isolated six fragments containing transcription activity. Using one of the obtained fragments as...
Atsushi Toyoda, Atsushi Toyoda, Yasuyuki Fukumaki, Masahira Hattori, Yoshiyuki Sakaki
Gene   164 351-355   1995年10月
Many eukaryote promoters, particularly those for so-called housekeeping genes, have multiple GC boxes which are the binding sites of the transcription factor, Spl. It has been proposed that Spl binds to the multiple GC boxes, and then the GC box-b...
A. Toyoda, A. Toyoda, J. Kusuda, H. Maeda, K. Hashimoto
Mammalian Genome   6 426-428   1995年6月
Jun Kusuda, Reiko Tanuma, Eisuke Gotoh, Atushi Toyoda, Katsuyuki Hashimoto
Human Genetics   95 233-234   1995年2月
In order to determine the chromosomal locations of an autoimmune antigen, the coilin gene and its pseudogene, we amplified the segments of the two genes by the polymerase chain reaction (PCR) and screened a panel of somatic cell hybrids for the pr...
Masahira Hattori, Atushi Toyoda, Hitoshi Ichikawa, Takashi Ito, Hideko Ohgusu, Nobue Oishi, Takeshi Kano, Satoru Kuhara, Misao Ohki, Yoshiyuki Sakaki, Yoshiyuki Sakaki
Genomics   17 39-44   1993年1月
We isolated and analyzed 19 NotI site-containing clones specific for human chromosome 21. The overall process consisted of selective isolation of Not I site-containing clones from flow-sorted chromosome 21 libraries, selection of independent clone...

Misc

 
Koji Kasai, Junpei Takano, Kyoko Miwa, Kyoko Miwa, Atsushi Toyoda, Atsushi Toyoda, Toru Fujiwara, Toru Fujiwara, Toru Fujiwara
Journal of Biological Chemistry   286 6175-6183   2011年2月
Boron homeostasis is important for plants, as boron is essential but is toxic in excess. Under high boron conditions, the Arabidopsis thaliana borate transporter BOR1 is trafficked from the plasma membrane (PM) to the vacuole via the endocytic pat...
Junpei Takano, Junpei Takano, Mayuki Tanaka, Atsushi Toyoda, Atsushi Toyoda, Kyoko Miwa, Kyoko Miwa, Koji Kasai, Kentaro Fuji, Hitoshi Onouchi, Satoshi Naito, Satoshi Naito, Toru Fujiwara
Proceedings of the National Academy of Sciences of the United States of America   107 5220-5225   2010年3月
Boron (B) is essential for plant growth but is toxic when present in excess. In the roots of Arabidopsis thaliana under B limitation, a boric acid channel, NIP5;1, and a boric acid/borate exporter, BOR1, are required for efficient B uptake and sub...
Y. Kuroki, A. Toyoda, H. Noguchi, T. D. Taylor, T. Itoh, D. S. Kim, D. W. Kim, S. H. Choi, I. C. Kim, H. H. Choi, Y. S. Kim, Y. Satta, N. Saitou, T. Yamada, S. Morishita, M. Hattori, Y. Sakaki, H. S. Park, A. Fujiyama
Nature Genetics   38 389   2006年3月
Y. Kuroki, A. Toyoda, H. Noguchi, T. D. Taylor, T. Itoh, D. S. Kim, D. W. Kim, S. H. Choi, I. C. Kim, H. H. Choi, Y. S. Kim, Y. Satta, N. Saitou, T. Yamada, S. Morishita, M. Hattori, Y. Sakaki, H. S. Park, A. Fujiyama
Nature Genetics   38    2006年2月
Chad Nusbaum, Michael C. Zody, Mark L. Borowsky, Michael Kamal, Chinnappa D. Kodira, Todd D. Taylor, Charles A. Whittaker, Jean L. Chang, Christina A. Cuomo, Ken Dewar, Michael G. FitzGerald, Xiaoping Yang, Amr Abouelleil, Nicole R. Allen, Scott Anderson, Toby Bloom, Boris Bugalter, Jonathan Butler, April Cook, David DeCaprio, Reinhard Engels, Manuel Garber, Andreas Gnirke, Nabil Hafez, Jennifer L. Hall, Catherine Hosage Norman, Takehiko Itoh, David B. Jaffe, Yoko Kuroki, Jessica Lehoczky, Annie Lui, Pendexter Macdonald, Evan Mauceli, Tarjei S. Mikkelsen, Jerome W. Naylor, Robert Nicol, Cindy Nguyen, Hideki Noguchi, Sinéad B. O'Leary, Keith O'Neill, Bruno Piqani, Cherylyn L. Smith, Jessica A. Talamas, Kerri Topham, Yasushi Totoki, Atsushi Toyoda, Hester M. Wain, Sarah K. Young, Qiandong Zeng, Andrew R. Zimmer, Asao Fujiyama, Masahira Hattori, Bruce W. Birren, Yoshiyuki Sakaki, Eric S. Lander
Nature   438 696   2005年12月
Atsushi Kawakami, Atsushi Kawakami, Yasuhiro Nojima, Yasuhiro Nojima, Atsushi Toyoda, Atsushi Toyoda, Mikako Takahoko, Miki Satoh, Miki Satoh, Hideomi Tanaka, Hideomi Tanaka, Hironori Wada, Ichiro Masai, Ichiro Masai, Harumi Terasaki, Yoshiyuki Sakaki, Hiroyuki Takeda, Hitoshi Okamoto, Hitoshi Okamoto
Current Biology   15 1337   2005年7月
Y. Sakaki, H. Watanabe, T. Taylor, M. Hattori, A. Fujiyama, A. Toyoda, Y. Kuroki, T. Itoh, N. Saitou, S. Oota, C. G. Kim, T. Kitano, H. Lehrach, M. L. Yaspo, R. Sudbrak, A. Kahla, R. Reinhardt, M. Kube, M. Platzer, S. Taenzer, P. Galgoczy, A. Kel, H. Blöecker, M. Scharfe, G. Nordsiek, I. Hellmann, I. Hellmann, P. Khaitovich, P. Khaitovich, S. Pääbo, S. Pääbo, Z. Chen, S. Y. Wang, S. X. Ren, X. L. Zhang, H. J. Zheng, G. F. Zhu, B. F. Wang, G. P. Zhao, S. F. Tsai, K. Wu, T. T. Liu, K. J. Hsiao, H. S. Park, Y. S. Lee, J. E. Cheong, S. H. Choi
Cold Spring Harbor Symposia on Quantitative Biology   68 455-460   2003年12月
Y. Sakaki, H. Watanabe, A. Fujiyama, M. Hattori, A. Toyoda, T. D. Taylor
International Congress Series   1246 183-187   2002年12月
Comparative genomics is a powerful approach to extract genetic information from large stretches of nucleotide sequences through identification of conserved regions that are most likely functionally important. Genomic information is also the most v...
M. Hattori, A. Fujiyama, T. D. Taylor, H. Watanabe, T. Yada, H. S. Park, A. Toyoda, K. Ishll, Y. Totoki, D. K. Choi, Y. Groner, E. Soeda, M. Ohki, T. Takagi, Y. Sakaki, S. Taudlen, K. Blechschmidt, A. Polley, U. Menzel, J. Delabar, K. Kumpf, R. Lehmann, D. Patterson, K. Reichwald, A. Rump, M. Schillhabel, A. Schudy, W. Zimmermann, A. Rosenthal, J. Kudoh, K. Schibuya, K. Kawasaki, S. Asakawa, A. Shintani, T. Sasaki, K. Nagamine, S. Mitsuyama, S. E. Antonarakis, S. Minoshima, N. Shimizu, G. Nordsiek, K. Hornischer, P. Brant, M. Scharfe, O. Schon, A. Desario, J. Relchelt, G. Kauer, H. Blocker, J. Ramser, A. Beck, S. Klages, S. Hennig, L. Riesselmann, E. Dagand, T. Haaf, S. Wehrmeyer, K. Borzym, K. Gardiner, D. Nizetic, F. Francis, H. Lehrach, R. Reinhardt, M. L. Yaspo
Nature   407 110   2000年9月
Y. Sakaki, M. Hattori, A. Toyoda, H. Watanabe, T. Yada, T. Taylor, H. S. Park, Y. Totoki, A. Fujiyama
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme   45 2520-2527   2000年1月

講演・口頭発表等

 
Joint porphyra genome project to reveal early development of plantsystems
Choi,D.-W., Choi, S.-H., Fujiyama, A., Hwang, M.S, Kuroki, Y., Mikami, K., Park, H.-J., Saga, N., Tabata, S., and Toyoda, A.
The Biology of Genomes, CSHL   2008年5月6日   
国立遺伝学研究所以外との共同発表あり
Comparative metagenomics revealed commonly enriched gene sets in human intestine.
Kurokawa, K., Ito, T., Kuwahara, T., Oshima, K., Toh, H., Toyoda, A., Taylor, T.D., Nogucji, H., Mori, H., Kim, S.-W., Itoh, K., Morita, H., Takami, H., Sakaki, T., Hayashi, T.and Hattori, M.
The Biology of Genomes. CSHL   2008年5月6日   
国立遺伝学研究所以外との共同発表あり
Comprehensive analysis of Y chromosomes toward understanding of the male-specific genome functions.
Kuroki, Y.,Toyoda, A., Tatsumoto, S., Sakaki, Y. and ,Fujiyama, A.
The Biology of Genomes. CSHL   2008年5月6日   
国立遺伝学研究所以外との共同発表あり
Genome Sequencing Project of a Unicellular Choanoflagellate, Monosiga ovata: Extensive Molecular Phylogenetic Analysis with Choanoflagellate Genes Reveals Divergence Patterns of Gene Family Members in the Early Evolution of Metazoans.
Iwabe, N., Kuma, K., Katoh, K., Suga, H., Hirose, N., Toh, H., Miyata, T., Suzuki, Y., Kasahara, M., Narita, t., Shin-i, T., Kuroki, Y., Toyoda, A., Sugano, S., Morishita, S., Kohara, Y. and Fujiyama, A.
XXInternational Congress of Genetics   2008年7月12日   
国立遺伝学研究所以外との共同発表あり
Comparative Analysis of Chromosome 21 Subtelomeric Regions between Human and Chimpanzee.
Kuroki, Y.,Toyoda, A.,Tatsumoto, S.,Sakaki, Y. and Fujiyama, A.
XX International Congress of Genetics   2008年7月12日   
国立遺伝学研究所以外との共同発表あり
Streptomyces reveromyceticus由来インドールプレニルトランスフェラーゼの機能解析
高橋俊二,荒蒔加奈子,高木海,浦本昌和,豊田敦,野川俊彦,植木雅志,榊佳之,長田裕之
2008年度日本放線菌学会大会   2008年7月10日   
国立遺伝学研究所以外との共同発表あり
リベロマイシン多様化に関わるCoA ligase機能の解析
河田章寛,高橋俊二,高木海,浦本昌和,豊田敦,榊佳之,長田裕之
2008年度日本放線菌学会大会   2008年7月10日   
国立遺伝学研究所以外との共同発表あり
Meta-EST analysis of a symbiotic protistan community in the termite gut
Noda, S., Kurokawa, K., Tatsumoto, S., Sakaki, Y., Toyoda, A., Ohkuma, M.
The 12th International Symposium on Microbial Ecology (ISME12)   2008年8月17日   
国立遺伝学研究所以外との共同発表あり
Complete genome of the uncultured "Termite Group 1" bacteria in a single host protist cell
Hongoh, Y., Sharma, V.K., Prakash, T., Toyoda, A., Hattori, M., Ohkuma, M.
The 12th International Symposium on Microbial Ecology (ISME12)   2008年8月17日   
国立遺伝学研究所以外との共同発表あり
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
Watanabe, T., Totoki, Y., Toyoda, A., Kaneda, M., Miyagawa, S.,Obata, Y, Chiba, H., T. Kono, H., Kohara, Y., Nakano, T., Surani, A., Sakaki, Y.,Sasaki, H.
第31回日本分子生物学会、第81回日本生化学会合同大会   2008年12月9日   
国立遺伝学研究所以外との共同発表あり
Effect of Hyper-parallel sequencers on comparative genomics
Fujiyama, A., Toyoda, A., Kuroki, Y., Shin-I, T., Kohara, Y.
第31回日本分子生物学会、第81回日本生化学会大会合同大会   2008年12月9日   
国立遺伝学研究所以外との共同発表あり
マウス初期胚に存在する機能性small RNA の解析
大西悠亮, 十時泰, 豊田敦, 渡部聡朗, 佐々木裕之, 徳永勝士, 榊佳之, 北條浩彦
第31回日本分子生物学会、第81回日本生化学会大会合同大会   2008年12月9日   
国立遺伝学研究所以外との共同発表あり
立襟鞭毛虫Monosiga ovata ゲノムプロジェクト: I. ゲノムの概観
隈啓一, 岩部直之, 加藤和貴, 藤博幸, 廣瀬希, 菅裕, 宮田隆, 鈴木穣, 笠原雅弘, 新井理, 大石加寿子, 鹿児島浩, 豊田敦, 黒木陽子, 菅野純夫, 森下真一, 小原雄治, 藤山秋佐夫
第31回日本分子生物学会、第81回日本生化学会大会合同大会   2008年12月9日   
国立遺伝学研究所以外との共同発表あり
立襟鞭毛虫Monosiga ovata ゲノムプロジェクト: II. 動物の初期進化における遺伝子多様化
岩部直之, 隈啓一, 加藤和貴, 藤博幸, 廣瀬希, 佐々木剛, 菅裕, 宮田隆, 鈴木穣, 笠原雅弘, 新井理, 大石加寿子, 鹿児島浩, 豊田敦, 黒木陽子, 菅野純夫, 森下真一, 小原雄治, 藤山秋佐夫
第31回日本分子生物学会、第81回日本生化学会大会合同大会   2008年12月9日   
国立遺伝学研究所以外との共同発表あり
オキゴンドウMHC 領域のゲノム配列決定と比較ゲノム解析
渡辺舞, 細道一善, 野口英樹, 黒木陽子, 豊田敦, 田中彰, 猪子英俊, 藤山秋佐夫, 椎名隆
第31回日本分子生物学会、第81回日本生化学会大会合同大会   2008年12月9日   
国立遺伝学研究所以外との共同発表あり
Comparative analysis of glutamate receptor gene family between human and chimpanzee
Shibata, H., Goto, H., Watanabe, K., Kuroki, Y., Toyoda, A., Hattori , M., Sakaki Y., Fujiyama ,A., Fukumaki, Y.,
第31回日本分子生物学会、第81回日本生化学会大会合同大会   2008年12月9日   
国立遺伝学研究所以外との共同発表あり
Metagenomic analysis of deep subsurface core samples collected in an offingof the Shimokita Peninsula on the northwest Honshu, Japan
Takami, H., Toyoda, A., Itoh, T., Tubouchi, T., Nishi, S., Matsui, S., Hori, S., Arai, W., Morono, Y., Inagaki, F. & Takai. K.
7th International Symposium for Subsurface Microbiology (ISSM 2008)   2008年11月16日   
国立遺伝学研究所以外との共同発表あり
TWO WAVES INTROGRESSION OF SUBSPECIFIC GENOMES IN CLASSICAL LABORATORY MOUSE STRAINS
Takada, T., Ebata, T., Shin-I, T., Narita, T., Abe, K., Sakaki, Y., Toyoda, A., Obata, Y., Moriwaki, K., Kohara, Y. and Shiroishi, T
22nd International Mammalian Genome Conference   2008年11月2日   
bacterial 16S rRNA配列に基づく、下北半島掘削コアの深度別多様性解析
西 真郎、豊田 敦、松井 里美、坪内 泰志、堀 沙耶香、荒井 渉、諸野 祐樹、稲垣 史生、高井 研、高見 英人
第24回日本微生物生態学会   2008年11月25日   
国立遺伝学研究所以外との共同発表あり
下北半島東方沖掘削コアのメタゲノミクス
高見 英人、豊田 敦、伊藤 武彦、坪内 泰志、松井 里美、堀 沙耶香、西 真郎、荒井 渉、諸野、稲垣 史生、高井 研
第24回日本微生物生態学会   2008年11月25日