Yuki TSUKADA

Profile Information

Affiliation: Senior Assistant Professor, Faculty of Science and Technology Department of Biosciences and Infomatics, Keio University

Degree: 博士（理学）(奈良先端科学技術大学院大学)

Researcher number: 80580000
J-GLOBAL ID: 201101085928550500
researchmap Member ID: B000005106

External link: http://kaken.nii.ac.jp/ja/r/80580000

http://elegans.bio.nagoya-u.ac.jp/~tsukada/

Research Interests

包括脳ネットワーク

Research Areas

Life sciences / Neuroscience - general /

Research History

Apr, 2023 - Present

Senior Assistant Professor, Faculty of Science and Technology Department of Biosciences and Infomatics, Keio University
Sep, 2009 - Mar, 2023

助教, 名古屋大学理学(系)研究科(研究院)

Education

Apr, 2004 - Dec, 2008

Graduate School of Information Science, Nara Institute of Science and Technology
Apr, 1998 - Mar, 2002

International Christian University

Papers

cGMP dynamics that underlies thermosensation in temperature-sensing neuron regulates thermotaxis behavior in C. elegans.

Ichiro Aok, Makoto Shiota, Yuki Tsukada, Shunji Nakano, Ikue Mori

PloS one, 17(12) e0278343, Dec 6, 2022 Peer-reviewed
Genetic screens identified dual roles of MAST kinase and CREB within a single thermosensory neuron in the regulation of C. elegans thermotaxis behavior.

Shunji Nakano, Airi Nakayama, Hiroo Kuroyanagi, Riku Yamashiro, Yuki Tsukada, Ikue Mori

G3 (Bethesda, Md.), 12(11), Sep 14, 2022 Peer-reviewed
Age‐dependent changes in response property and morphology of a thermosensory neuron and thermotaxis behavior in Caenorhabditis elegans

Tzu‐Ting Huang, Hironori J. Matsuyama, Yuki Tsukada, Aakanksha Singhvi, Ru‐Ting Syu, Yun Lu, Shai Shaham, Ikue Mori, Chun‐Liang Pan

Aging Cell, 19(5), May, 2020 Peer-reviewed
Presynaptic MAST kinase controls opposing postsynaptic responses to convey stimulus valence in Caenorhabditis elegans.

Shunji Nakano, Muneki Ikeda, Yuki Tsukada, Xianfeng Fei, Takamasa Suzuki, Yusuke Niino, Rhea Ahluwalia, Ayana Sano, Rumi Kondo, Kunio Ihara …

Proceedings of the National Academy of Sciences of the United States of America, 117(3) 1638-1647, Jan 21, 2020 Peer-reviewed
A behavior-based drug screening system using a Caenorhabditis elegans model of motor neuron disease.

Ikenaka K, Tsukada Y, Giles AC, Arai T, Nakadera Y, Nakano S, Kawai K, Mochizuki H, Katsuno M, Sobue G …

Scientific reports, 9(1) 10104, Jul, 2019 Peer-reviewed
Identification of animal behavioral strategies by inverse reinforcement learning

Shoichiro Yamaguchi, Honda Naoki, Muneki Ikeda, Yuki Tsukada, Shunji Nakano, Ikue Mori, Shin Ishii

PLoS Computational Biology, 14(5) e1006122., May 1, 2018 Peer-reviewed
Uncoordinated centrosome cycle underlies the instability of nondiploid somatic cells in mammals

Kan Yaguchi, Ryo Matsui, Takahiro Yamamoto, Yuki Tsukada, Atsuko Shibanuma, Keiko Kamimura, Toshiaki Koda, Ryota Uehara

J Cell Biol., 217(7) 2463-2483, Apr, 2018 Peer-reviewed
Thermotactic behavioral strategy of C. elegans identified using inverse reinforcement learning

Yamaguchi, S, Naoki, H, Ikeda, M, Tsukada, Y, Nakano, S, Mori, I, Ishii, S

PLoS Computational Biology, 2018 Peer-reviewed
system identification of thermosensory neuron and reconstruction of thermal environment

Tsukada Yuki, Mori Ikue

Proceedings of the Japan Joint Automatic Control Conference, 60 999-1000, 2017
Reconstruction of Spatial Thermal Gradient Encoded in Thermosensory Neuron AFD in Caenorhabditis elegans

Yuki Tsukada, Masataka Yamao, Honda Naoki, Tomoyasu Shimowada, Noriyuki Ohnishi, Atsushi Kuhara, Shin Ishii, Ikue Mori

JOURNAL OF NEUROSCIENCE, 36(9) 2571-2581, Mar, 2016 Peer-reviewed
Japanese studies on neural circuits and behavior of Caenorhabditis elegans

Hiroyuki Sasakura, Yuki Tsukada, Shin Takagi, Ikue Mori

FRONTIERS IN NEURAL CIRCUITS, 7(187) doi: 10.3389/fncir.2013.00187, Nov, 2013 Peer-reviewed
Aurora B and Kif2A control microtubule length for assembly of a functional central spindle during anaphase.

Ryota Uehara, Yuki Tsukada, Tomoko Kamasaki, Ina Poser, Kinya Yoda, Daniel W Gerlich, Gohta Goshima

The Journal of cell biology, 202(4) 623-36, Aug 19, 2013 Peer-reviewed
Feedback regulation of microscopes by image processing

Yuki Tsukada, Koichi Hashimoto

Development Growth and Differentiation, 55(4) 550-562, May, 2013 Peer-reviewed
Novel and Conserved Protein Macoilin Is Required for Diverse Neuronal Functions in Caenorhabditis elegans

Akiko Miyara, Akane Ohta, Yoshifumi Okochi, Yuki Tsukada, Atsushi Kuhara, Ikue Mori

PLOS GENETICS, 7(5), May, 2011 Peer-reviewed
Novel and conserved protein macoilin is required for diverse neuronal functions in caenorhabditis elegans

Akiko Miyara, Akane Ohta, Yoshifumi Okochi, Yuki Tsukada, Atsushi Kuhara, Ikue Mori

PLoS Genetics, 7(5) e1001384, May, 2011 Peer-reviewed
Sprouty4, an FGF Inhibitor, Displays Cyclic Gene Expression under the Control of the Notch Segmentation Clock in the Mouse PSM

Shinichi Hayashi, Taiju Shimoda, Masato Nakajima, Yuki Tsukada, Yuichi Sakumura, J. Kim Dale, Miguel Maroto, Kenji Kohno, Takaaki Matsui, Yasumasa Bessho

PLOS ONE, 4(5) e5603, May, 2009 Peer-reviewed
On the synchrony of morphological and molecular signaling events in cell migration

J. Dauwels, Y. Tsukada, Y. Sakumura, S. Ishii, K. Aoki, T. Nakamura, M. Matsuda, F. Vialatte, A. Cichocki

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 5506 LNCS(PART 1) 469-477, 2009 Peer-reviewed
Quantification of Local Morphodynamics and Local GTPase Activity by Edge Evolution Tracking

Yuki Tsukada, Kazuhiro Aoki, Takeshi Nakamura, Yuichi Sakumura, Michiyuki Matsuda, Shin Ishii

PLOS COMPUTATIONAL BIOLOGY, 4(11) e1000223, Nov, 2008 Peer-reviewed
A molecular model for axon guidance based on cross talk between Rho GTPases

Y Sakumura, Y Tsukada, N Yamamoto, S Ishii

BIOPHYSICAL JOURNAL, 89(2) 812-822, Aug, 2005 Peer-reviewed

Misc.

Image Processing and Analysis in Java

33(7) 778-783, 2014
ImageJ定量階梯(第4回)簡単な画像処理とその応用(色符号化,マスク,鮮鋭化)

塚田祐基

細胞工学, 33(3) 337-342, 2014
システム神経科学スプリングスクール2013開催報告

中江健, 本田直樹, 浦久保秀俊, 山尾将隆, 塚田祐基, 石井信

日本神経回路学会誌 = The Brain & neural networks, 20(2) 84-87, Jun 5, 2013
私の学会聞き歩き定量生物学の会・第三回年会--手段を選ばない生命科学総力戦へ向けて

塚田祐基

細胞工学, 30(4) 440-442, 2011
Quantitative analysis of exploratory behavioral patterns during thermotaxis of C. elegans

Yuta Ochiai, Yuki Tsukada, Ikue Mori

NEUROSCIENCE RESEARCH, 71 E181-E181, 2011
Fluorescence imaging of neuronal dendrites in moving C. elegans with high speed tracking system

Yuki Tsukada, Ikue Mori

NEUROSCIENCE RESEARCH, 71 E390-E390, 2011
Quantification and phenomenological model for morphology

Cell technology, 29(4) 339-343, 2010
Studies on neuronal function of a novel and conserved protein TTX-8

Akiko Miyara, Akane Ohta, Yoshifumi Okochi, Yuki Tsukada, Atsushi Kuhara, Ikue Mori

NEUROSCIENCE RESEARCH, 65 S216-S216, 2009
Quantitative behavioral analysis of freely moving C. elegans

Yuki Tsukada, Akiko Miyara, Tomoyasu Shimowada, Noriyuki Ohnishi, Atsushi Kuhara, Ikue Mori

NEUROSCIENCE RESEARCH, 65 S226-S227, 2009
Quantitative morphodynamic analysis of time-lapse imaging by edge evolution tracking

Tsukada, Y, Sakumura, Y, Ishii, S

Proceedings of the International Conference on Neural Information Processing, Lecture Notes in Computer Science, 4984 817-826, 2007 Peer-reviewed

Books and Other Publications

"個体行動の定量生物学" 定量生物学小林徹也編

塚田祐基 (Role: Contributor)

化学同人, 2018
"細胞運動の定量生物学" 定量生物学小林徹也編

高木拓明, 塚田祐基 (Role: Contributor)

化学同人, 2018
"ImageJではじめる生物画像解析"

三浦耕太, 塚田祐基 (Role: Joint author)

学研メディカル秀潤社, 2016
"Optogenetics in Caenorhabditis elegans" Optogenetics -Light-Sensing Proteins and Their Applications,

Tsukada, Y, Mori, I (Role: Contributor)

Springer, 2015
"線虫を用いたオプトジェネティクス研究" オプトジェネティクス-光工学と遺伝学による行動制御技術の最前線-

塚田祐基, 森郁恵 (Role: Contributor)

NTS出版, 2013
"Behavioral Analysis in Caenorhabditis elegans" Methods in Neuroethological Research

Tsukada, Y, Mori, I (Role: Contributor)

2013

Research Projects

Infophysics for animal navigation

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area), Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area), Japan Society for the Promotion of Science, Apr, 2022 - Mar, 2024
Principle of body malfunctioning through local cell division failure

Grants-in-Aid for Scientific Research Fund for the Promotion of Joint International Research (Fostering Joint International Research (B)), Fund for the Promotion of Joint International Research (Fostering Joint International Research (B)), Japan Society for the Promotion of Science, Oct, 2019 - Mar, 2024
神経情報伝達におけるシナプス数と位置の役割

科学研究費助成事業基盤研究(C), 基盤研究(C), 日本学術振興会, Apr, 2020 - Mar, 2023

塚田祐基
Principle of chronic centrosome aberrations in whole-genome duplicated cells and its contribution to cellular heterogeneity

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2019 - Mar, 2022

Uehara Ryota
information processing mechanisms in an inter-neuronal circuit

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (A), Grant-in-Aid for Scientific Research (A), Japan Society for the Promotion of Science, Apr, 2016 - Mar, 2019

Mori Ikue, NAKANO Shunji, TSUKADA Yuki
複数のカメラを用いた顕微鏡オートフォーカスアルゴリズムの開発

第2部研究助成, 公益財団法人堀科学芸術振興財団, Apr, 2017 - Mar, 2018

塚田祐基
Lifespan extension by peroxidase/dual oxidase-mediated ROS signaling through pyrroloquinoline quinone in C. elegans

Grants-in-Aid for Scientific Research Grant-in-Aid for Challenging Exploratory Research, Grant-in-Aid for Challenging Exploratory Research, Japan Society for the Promotion of Science, Apr, 2015 - Mar, 2017

MORI Ikue, NAKANO Shunji, TSUKADA Yuki
高速トラッキング顕微鏡を用いた神経微小領域の活動計測

挑戦的萌芽, 文部科学省, Apr, 2014 - Mar, 2017

塚田祐基
Analysis of behavior and neural circuits with optogenetics

Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (A), Grant-in-Aid for Scientific Research (A), Japan Society for the Promotion of Science, Apr, 2012 - Mar, 2016

MORI Ikue, TSUKADA Yuki, NAKANO Shunji
Exploring information processing mechanisms of searching behavior

Grants-in-Aid for Scientific Research, Grant-in-Aid for Young Scientists (B), Japan Society for the Promotion of Science, Apr, 2012 - Mar, 2014

TSUKADA Yuki
高速トラッキングによる局所神経回路の機能動態

科学研究費補助金(新学術領域研究(研究領域提案型)), 新学術領域研究(研究領域提案型), 文部科学省, Apr, 2011 - Mar, 2013

塚田祐基

Profile Information

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Research History

Education

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Misc.

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