チェンシュン (Xun Chen) - マイポータル

基本情報

所属: 京都大学特任助教 (特任助教)

連絡先: chen.xun.3rkyoto-u.ac.jp
研究者番号: 30885158
ORCID iD: https://orcid.org/0000-0003-0327-1888
J-GLOBAL ID: 202001005800446650
researchmap会員ID: R000012553

外部リンク: https://ashbi.kyoto-u.ac.jp/ja/members/xun-chen/

研究キーワード

研究分野

経歴

2021年6月 - 現在

京都大学
2020年2月 - 2021年5月

京都大学
2014年10月 - 2019年5月

University of Vermont, Microbiology and Molecular Genetics Department (Postdoctoral researcher)

学歴

2008年10月 - 2014年6月

Huazhong Agricultural University, College of Plant Sciences & Technology
2004年9月 - 2008年6月

Huazhong Agricultural University, College of Plant Sciences & Technology
2005年9月 - 2006年6月

Huazhong University of Science and Technology, School of Computer Science & Technology

受賞

論文

Temporal and structural patterns of hepatitis B virus integrations in hepatocellular carcinoma

95(10) 2023年10月25日査読有り筆頭著者責任著者
Genotyping of Transposable Element Insertions Segregating in Human Populations Using Short-Read Realignments

Xun Chen, Guillaume Bourque, Clément Goubert

Transposable Elements 63-83 2023年責任著者
Epigenetic variation impacts ancestry-associated differences in the transcriptional response to influenza infection

Katherine A Aracena, Yen-Lung Lin, Kaixuan Luo, Alain Pacis, Saideep Gona, Zepeng Mu, Vania Yotova, Renata Sindeaux, Albena Pramatarova, Marie-Michelle Simon …

2022年5月11日
Transposable elements are associated with the variable response to influenza infection

Xun Chen, Alain Sarabia Pacis, Katherine A Aracena, Saideep Gona, Tony Kwan, Cristian Groza, Yen Lung Lin, Renata Helena Monteiro Sindeaux, Vania Yotova, Albena Pramatarova …

2022年5月10日
Genome graphs detect human polymorphisms in active epigenomic state during influenza infection

Cristian Groza, Xun Chen, Alain Pacis, Marie-Michelle Simon, Albena Pramatarova, Katherine A. Aracena, Tomi Pastinen, Luis B. Barreiro, Guillaume Bourque

2021年10月1日
Characterization of Hepatitis B Virus Integrations Identified in Hepatocellular Carcinoma Genomes

Pranav Mathkar, Xun Chen*, Arvis Sulovari, Dawei Li*

Viruses 13(2) 245-245 2021年2月4日査読有り責任著者
Sequencing facility and DNA source associated patterns of virus-mappable reads in whole-genome sequencing data

Xun Chen, Dawei Li

Genomics 2020年12月査読有り
Comprehensive comparative analysis of methods and software for identifying viral integrations

Xun Chen, Jason Kost, Dawei Li

Briefings in Bioinformatics 20(6) 2088-2097 2019年11月27日査読有り
ERVcaller: identifying polymorphic endogenous retrovirus and other transposable element insertions using whole-genome sequencing data

Xun Chen, Dawei Li

Bioinformatics 35(20) 3913-3922 2019年10月15日査読有り
A CACTA ‐like transposable element in the upstream region of BnaA9 . CYP 78A9 acts as an enhancer to increase silique length and seed weight in rapeseed

Liuliu Shi, Jurong Song, Chaocheng Guo, Bo Wang, Zhilin Guan, Pu Yang, Xun Chen, Qinghua Zhang, Graham J. King, Jing Wang …

The Plant Journal 98(3) 524-539 2019年5月査読有り
A virome-wide clonal integration analysis platform for discovering cancer viral etiology

Xun Chen, Jason Kost, Arvis Sulovari, Nathalie Wong, Winnie S. Liang, Jian Cao, Dawei Li

Genome Research 29(5) 819-830 2019年5月査読有り
A comprehensive and precise set of intervarietal substitution lines to identify candidate genes and quantitative trait loci in oilseed rape (Brassica napus L.)

Shanjing Yang, Bao Zhang, Gang Liu, Baohua Hong, Jinsong Xu, Xun Chen, Bo Wang, Zhikun Wu, Fan Hou, Xiaopeng Yue …

Theoretical and Applied Genetics 131(10) 2117-2129 2018年10月査読有り
Evaluation of Linkage Disequilibrium Pattern and Association Study on Seed Oil Content in Brassica napus Using ddRAD Sequencing

Zhikun Wu, Bo Wang, Xun Chen, Jiangsheng Wu, Graham J. King, Yingjie Xiao, Kede Liu

PLOS ONE 11(1) e0146383-e0146383 2016年1月5日査読有り
Genome-wide DNA methylation profiling by modified reduced representation bisulfite sequencing in Brassica rapa suggests that epigenetic modifications play a key role in polyploid genome evolution

Xun Chen, Xianhong Ge, Jing Wang, Chen Tan, Graham J. King, Kede Liu

Frontiers in Plant Science 6 2015年10月9日査読有り
QTL Scanning for Rice Yield Using a Whole Genome SNP Array

Cong Tan, Zhongmin Han, Huihui Yu, Wei Zhan, Weibo Xie, Xun Chen, Hu Zhao, Fasong Zhou, Yongzhong Xing

Journal of Genetics and Genomics 40(12) 629-638 2013年12月査読有り
Development of a core set of single-locus SSR markers for allotetraploid rapeseed (Brassica napus L.)

Haitao Li, Muhammad Younas, Xiaofeng Wang, Xuemin Li, Lin Chen, Bo Zhao, Xun Chen, Jinsong Xu, Fan Hou, Baohua Hong …

Theoretical and Applied Genetics 126(4) 937-947 2013年4月査読有り
Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus

Xun Chen, Xuemin Li, Bing Zhang, Jinsong Xu, Zhikun Wu, Bo Wang, Haitao Li, Muhammad Younas, Lei Huang, Yingfeng Luo …

BMC Genomics 14(1) 346-346 2013年査読有り
Abundance, marker development and genetic mapping of microsatellites from unigenes in Brassica napus

Fang Wang, Xiaofeng Wang, Xun Chen, Yingjie Xiao, Haitao Li, Shunchang Zhang, Jinsong Xu, Jie Fu, Lei Huang, Chao Liu …

Molecular Breeding 30(2) 731-744 2012年8月査読有り
The Arabidopsis RETARDED ROOT GROWTH Gene Encodes a Mitochondria-Localized Protein That Is Required for Cell Division in the Root Meristem

Xiaojing Zhou, Qiang Li, Xun Chen, Jianping Liu, Qinghua Zhang, Yajie Liu, Kede Liu, Jian Xu

Plant Physiology 157(4) 1793-1804 2011年12月査読有り
Development and genetic mapping of microsatellite markers from whole genome shotgun sequences in Brassica oleracea

Haitao Li, Xun Chen, Yuan Yang, Jinsong Xu, Jianxun Gu, Jie Fu, Xiaoju Qian, Shunchang Zhang, Jiangsheng Wu, Kede Liu

Mol. Breed. 28(4) 585-596 2011年12月査読有り

もっとみる

講演・口頭発表等

Transposable elements reveal inter-individual variability in the human response to influenza infection

Xun Chen

The 1st International Symposium of CCII 2021年1月15日
Structural Variants and Viral Etiology

Xun Chen

Invited Seminar at Xiamen University 2019年11月11日
Human genomics and age-related diseases

Xun Chen

The Third International Youth Scholar "Rixin Forum" of Beijing University of Technology 2019年6月11日
A new platform for studying viral etiology in human cancers

Xun Chen

Viral Integration Detection Forum 2019年6月6日
A new platform for studying viral etiology in human cancers

Xun Chen

Invited Seminar at Chinese Academy of Medical Sciences & Peking Union Medical College, Suzhou Institute of Systems Medicine 2019年5月14日
A new platform for studying viral etiology in human cancers using whole-genome sequencing technology

Xun Chen

The 4th South Lake Innovation Forum for International Young Talents 2019年5月9日
A virome-wide clonal integration analysis platform for uncovering new cancer viral etiologies

Xun Chen

2018 UVM Cancer Center Clinical & Translational Research Symposium Cancer Control in A Rural Environment 2018年4月20日
Identifying and characterizing novel virus integrations in hepatocellular carcinoma genomes by virome-wide analysis of whole-genome sequencing data

UVM Graduate Student and Postdoctoral Trainee Research Showcase 2017年11月10日
Identifying and characterizing novel virus integrations in hepatocellular carcinoma genomes by virome-wide analysis of whole-genome sequencing data

Xun Chen

The American Society of Human Genetics (ASHG) 2017 2017年10月18日
Genome-scale DNA methylation profiling in Brassica rapa using modified RRBS method

Xun Chen

The 19th Crucifer Genetic Workshop and Brassica 2014 2014年3月31日
Comparison of three methods for SNP discovery using modified ddRADseq sequencing data in allotetraploid Brassica napus

Xun Chen

Plant & Animal Genome Asia 2013 2013年3月20日
Detection and genotyping of restriction fragment associated polymorphisms in polyploidy crops with a pseudo reference sequence: A case study in tetraploid Brassica napus

Xun Chen

Crop Genetic Improvement & Biology Seed Industry Doctoral Forum 2012 2012年11月2日
Fine mapping and cloning of one gene controlling seed coat color in Brassica napus

Xun Chen

Third International Conference on Plant Molecular Breeding 2010年9月5日

所属学協会

共同研究・競争的資金等の研究課題

Deciphering evolutionary differences of germline transposable element dynamics

Institute for the Advanced Study of Human Biology (ASHBi) ASHBi Fusion Research Grant 2020年6月 - 2022年6月

Xun Chen, Yusuke Murase, Masahiro Nagano, Bo Hu

学術貢献活動

Crop and Pasture Science

審査・評価, 査読
High-throughput

審査・評価, 査読
Plants

審査・評価, 査読
Genes

審査・評価, 査読
Cells

審査・評価, 査読
Viruses

審査・評価, 査読
Briefings in Bioinformatics

審査・評価, 査読
Nature Communications

審査・評価, 査読