Yang Ziwei (Ziwei Yang) - マイポータル

基本情報

所属: 京都大学大学院情報学研究科知能情報学専攻

ORCID iD: https://orcid.org/0000-0001-9846-840X
J-GLOBAL ID: 202401019785688714
researchmap会員ID: R000063729

論文

DeepGDel: Deep Learning-Based Gene Deletion Prediction Framework for Growth-Coupled Production in Genome-Scale Metabolic Models

Ziwei Yang, Takeyuki Tamura

IEEE Transactions on Computational Biology and Bioinformatics 22(5) 2252-2266 2025年9月
DBgDel: Database-Enhanced Gene Deletion Framework for Growth-Coupled Production in Genome-Scale Metabolic Models

Ziwei Yang, Takeyuki Tamura

IEEE Transactions on Computational Biology and Bioinformatics 22(4) 1415-1427 2025年7月
MLOmics: Cancer Multi-Omics Database for Machine Learning

Ziwei Yang, Rikuto Kotoge, Xihao Piao, Zheng Chen, Lingwei Zhu, Peng Gao, Yasuko Matsubara, Yasushi Sakurai, Jimeng Sun

Scientific Data 12(1) 913-913 2025年5月30日
ExPath: Towards Explaining Targeted Pathways for Biological Knowledge Bases.

Rikuto Kotoge, Ziwei Yang 0002, Zheng Chen 0012, Yushun Dong, Yasuko Matsubara, Jimeng Sun 0001, Yasushi Sakurai

CoRR abs/2502.18026 2025年2月
GeSubNet: Gene Interaction Inference for Disease Subtype Network Generation.

Ziwei Yang 0002, Zheng Chen 0012, Xin Liu 0020, Rikuto Kotoge, Peng Chen 0035, Yasuko Matsubara, Yasushi Sakurai, Jimeng Sun 0001

ICLR 2025年
Strategic Multi-Omics Data Integration via Multi-Level Feature Contrasting and Matching

Jinli Zhang, Hongwei Ren, Zongli Jiang, Zheng Chen, Ziwei Yang, Yasuko Matsubara, Yasushi Sakurai

IEEE Transactions on NanoBioscience 23(4) 579-590 2024年
Can Large Language Models Replace Data Scientists in Clinical Research?

Zifeng Wang 0008, Benjamin P. Danek, Ziwei Yang 0002, Zheng Chen 0012, Jimeng Sun 0001

CoRR abs/2410.21591 2024年
Learning vector quantized representation for cancer subtypes identification.

Zheng Chen 0012, Ziwei Yang 0002, Lingwei Zhu, Peng Gao, Takashi Matsubara 0001, Shigehiko Kanaya, Md. Altaf-Ul-Amin

Computer Methods and Programs in Biomedicine 236 107543-107543 2023年6月
Sleep Staging Framework with Physiologically Harmonized Sub-Networks

Zheng Chen, Ziwei Yang, Dong Wang, Xin Zhu, Naoaki Ono, M.D. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang

Methods 209 18-28 2023年1月
Automated Sleep Staging via Parallel Frequency-Cut Attention

Zheng Chen, Ziwei Yang, Lingwei Zhu, Wei Chen, Toshiyo Tamura, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, MING HUANG

IEEE Transactions on Neural Systems and Rehabilitation Engineering 31 1974-1985 2023年
MoCLIM: Towards Accurate Cancer Subtyping via Multi-Omics Contrastive Learning with Omics-Inference Modeling.

Ziwei Yang 0002, Zheng Chen 0012, Yasuko Matsubara, Yasushi Sakurai

Proceedings of the 32nd ACM International Conference on Information and Knowledge Management(CIKM) 2895-2905 2023年
MFHCC: Multi-View Feature Hierarchical Contrastive Clustering Model for Multi-Omics Data.

Zongli Jiang, Hongwei Ren, Ziwei Yang 0002, Jinli Zhang, Zheng Chen 0012

IEEE International Conference on Bioinformatics and Biomedicine(BIBM) 1182-1187 2023年
Adaptive Spike-Like Representation of EEG Signals for Sleep Stages Scoring

Lingwei Zhu, Ziwei Yang, Koki Odani, Guang Shi, Yirong Kan, Zheng Chen, Renyuan Zhang

2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) 4453-4456 2022年7月11日
Multi-Tier Platform for Cognizing Massive Electroencephalogram

Zheng Chen, Lingwei Zhu, Ziwei Yang, Renyuan Zhang

Proceedings of the Thirty-First International Joint Conference on Artificial Intelligence 2464-2470 2022年7月
Automated Cancer Subtyping via Vector Quantization Mutual Information Maximization.

Zheng Chen, Lingwei Zhu, Ziwei Yang, Takashi Matsubara

European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD) 2022年
Enhancement on Model Interpretability and Sleep Stage Scoring Performance with A Novel Pipeline Based on Deep Neural Network.

Zheng Chen 0012, Ziwei Yang 0002, Ming Huang 0002, Toshiyo Tamura, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya

CoRR abs/2204.03173 2022年
Automated Cancer Subtyping via Vector Quantization Mutual Information Maximization.

Zheng Chen 0012, Lingwei Zhu, Ziwei Yang 0002, Takashi Matsubara 0001

Machine Learning and Knowledge Discovery in Databases - European Conference 88-103 2022年
Exploring the Feasibility of Transformer Based Models on Question Relatedness.

Honglin Shu, Pei Gao, Ziwei Yang 0002, Chen Li 0027, Man Wu

24th IEEE Int Conf on High Performance Computing & Communications; 8th Int Conf on Data Science & Systems; 20th Int Conf on Smart City; 8th Int Conf on Dependability in Sensor(HPCC/DSS/SmartCity/DependSys) 831-838 2022年
Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data.

Ziwei Yang 0002, Lingwei Zhu, Zheng Chen 0012, Ming Huang 0002, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya

44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society(EMBC) abs/2204.02278 1113-1116 2022年
Hierarchical Categorical Generative Modeling for Multi-omics Cancer Subtyping.

Ziwei Yang 0002, Lingwei Zhu, Chen Li 0027, Zheng Chen 0012, Naoki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya

IEEE International Conference on Bioinformatics and Biomedicine(BIBM) 1350-1355 2022年

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