論文

査読有り
2017年1月

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

NUCLEIC ACIDS RESEARCH
  • Eric W. Deutsch
  • Attila Csordas
  • Zhi Sun
  • Andrew Jarnuczak
  • Yasset Perez-Riverol
  • Tobias Ternent
  • David S. Campbell
  • Manuel Bernal-Llinares
  • Shujiro Okuda
  • Shin Kawano
  • Robert L. Moritz
  • Jeremy J. Carver
  • Mingxun Wang
  • Yasushi Ishihama
  • Nuno Bandeira
  • Henning Hermjakob
  • Juan Antonio Vizcaino
  • 全て表示

45
D1
開始ページ
D1100
終了ページ
D1106
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1093/nar/gkw936
出版者・発行元
OXFORD UNIV PRESS

The ProteomeXchange (PX) Consortium of proteomics resources (http://www.proteomexchange.org) was formally started in 2011 to standardize data submission and dissemination of mass spectrometry proteomics data worldwide. We give an overview of the current consortium activities and describe the advances of the past few years. Augmenting the PX founding members (PRIDE and PeptideAtlas, including the PASSEL resource), two new members have joined the consortium: MassIVE and jPOST. ProteomeCentral remains as the common data access portal, providing the ability to search for data sets in all participating PX resources, now with enhanced data visualization components.We describe the updated submission guidelines, now expanded to include four members instead of two. As demonstrated by data submission statistics, PX is supporting a change in culture of the proteomics field: public data sharing is now an accepted standard, supported by requirements for journal submissions resulting in public data release becoming the norm. More than 4500 data sets have been submitted to the various PX resources since 2012. Human is the most represented species with approximately half of the data sets, followed by some of the main model organisms and a growing list of more than 900 diverse species. Data reprocessing activities are becoming more prominent, with both MassIVE and PeptideAtlas releasing the results of reprocessed data sets. Finally, we outline the upcoming advances for ProteomeXchange.

リンク情報
DOI
https://doi.org/10.1093/nar/gkw936
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/27924013
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000396575500151&DestApp=WOS_CPL
ID情報
  • DOI : 10.1093/nar/gkw936
  • ISSN : 0305-1048
  • eISSN : 1362-4962
  • PubMed ID : 27924013
  • Web of Science ID : WOS:000396575500151

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