1996 – 2001 Research Scientist, Kazusa DNA Research Institute
2001 – 2006 Senior Research Scientist
2003 – 2008 Visiting Associate Professor, Depertment of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo
2006 – 2008 Head, Laboratory of Plant Genome Informatics
2009 – present Professor, Genome Informatics Laboratory, National Institute of Genetic
Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J
Minamikawa MF, Nonaka K, Kaminuma E, Kajiya-Kanegae H, Onogi A, Goto S, Yoshioka T, Imai A, Hamada H, Hayashi T, Matsumoto S, Katayose Y, Toyoda A, Fujiyama A, Nakamura Y, Shimizu T, Iwata H
Japanese Journal of Lactic Acid Bacteria 27(3) 187-195 2016
Genome finishing still remains a laborious work that includes various validation processes requiring both wet and dry knowledge and consideration, although long-read sequencers such as PacBio RSII have largely contributed to lighten the burden. We...
Japanese Journal of Lactic Acid Bacteria 27(2) 101-110 2016
Long-read sequencing represented by Pacific Biosciences' single-molecule real-time (SMRT) technology has been widely used for microbial genomes. We overview an analysis procedure of Lactobacillus hokkaidonensis LOOC260T genome us...
Tanizawa Yasuhiro, Kaminuma Eli, Nakamura Yasukazu, Shimizu Kentaro, Kadota Koji
Japanese Journal of Lactic Acid Bacteria 27(1) 41-52 2016
<p>Genome assembly is a major task of NGS analyses. For this purpose, many assemblers based on the de Bruijn graph have been developed. In the framework, each node represents a series of overlapping k-mers (k nucleotides) and contigs...
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