Nakamura Yasukazu

J-GLOBAL         Last updated: May 10, 2019 at 17:06
 
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Name
Nakamura Yasukazu
Nickname
ikasumipapa
E-mail
ynnig.ac.jp
URL
http://charles.genes.nig.ac.jp/members/yn/
Affiliation
National Institute of Genetics
Section
Genome Informatics Laboratory
Job title
Professor
Degree
Ph.D(SOKENDAI)
Other affiliation
SOKENDAI (The Graduate University for Advanced Studies)Kazusa DNA Research Institute
Research funding number
60370920
Twitter ID
yaskaz
ORCID ID
0000-0002-6782-5715

Profile

1996 – 2001 Research Scientist, Kazusa DNA Research Institute
2001 – 2006 Senior Research Scientist
2003 – 2008 Visiting Associate Professor, Depertment of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo
2006 – 2008 Head, Laboratory of Plant Genome Informatics
2009 – present Professor, Genome Informatics Laboratory, National Institute of Genetic

Research Areas

 
 

Published Papers

 
Kanesaki Y, Hirose M, Hirose Y, Fujisawa T, Nakamura Y, Watanabe S, Matsunaga S, Uchida H, Murakami A
Genome announcements   6(7)    Feb 2018   [Refereed]
Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Nakamura Y, Ohkuma M, Kobayashi H
International journal of systematic and evolutionary microbiology   69(4) 964-969   Apr 2019   [Refereed]
Kodama Y, Mashima J, Kosuge T, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T
Nucleic acids research   46(D1) D30-D35   Jan 2018   [Refereed]
Kobayashi H, Tanizawa Y, Sakamoto M, Nakamura Y, Ohkuma M, Tohno M
International journal of systematic and evolutionary microbiology   69(2) 417-421   Feb 2019   [Refereed]
Tanizawa Y, Fujisawa T, Arita M, Nakamura Y
Methods in molecular biology (Clifton, N.J.)   1962 215-226   2019   [Refereed]
Tanizawa Y, Fujisawa T, Nakamura Y
Bioinformatics (Oxford, England)   34(6) 1037-1039   Nov 2017   [Refereed]
Tanizawa Y, Tada I, Kobayashi H, Endo A, Maeno S, Toyoda A, Arita M, Nakamura Y, Sakamoto M, Ohkuma M, Tohno M
International journal of systematic and evolutionary microbiology   68(11) 3512-3517   Nov 2018   [Refereed]
Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J
Cell   171(2) 287-304.e15   Oct 2017   [Refereed]
Kitazumi A, Pabuayon ICM, Ohyanagi H, Fujita M, Osti B, Shenton MR, Kakei Y, Nakamura Y, Brar DS, Kurata N, de Los Reyes BG
Scientific reports   8(1) 16346   Nov 2018   [Refereed]
Minamikawa MF, Nonaka K, Kaminuma E, Kajiya-Kanegae H, Onogi A, Goto S, Yoshioka T, Imai A, Hamada H, Hayashi T, Matsumoto S, Katayose Y, Toyoda A, Fujiyama A, Nakamura Y, Shimizu T, Iwata H
Scientific reports   7(1) 4721   Jul 2017   [Refereed]
Shimura Y, Hirose Y, Misawa N, Wakazuki S, Fujisawa T, Nakamura Y, Kanesaki Y, Yamaguchi H, Kawachi M
Genome announcements   5(14)    Apr 2017   [Refereed]
Ohyanagi H, Nakamura Y, Yano K
Plant & cell physiology   59(1) 1-2   Jan 2018   [Refereed]
Nakaya A, Ichihara H, Asamizu E, Shirasawa S, Nakamura Y, Tabata S, Hirakawa H
Methods in molecular biology (Clifton, N.J.)   1533 45-77   2017   [Refereed]
Mochizuki T, Tanizawa Y, Fujisawa T, Ohta T, Nikoh N, Shimizu T, Toyoda A, Fujiyama A, Kurata N, Nagasaki H, Kaminuma E, Nakamura Y
PloS one   12(2) e0172269   2017   [Refereed]
Ohyanagi H, Nakamura Y, Yano K
Plant & cell physiology   59(1) 1-2   Jan 2018   [Refereed]
Tanizawa Y, Kobayashi H, Kaminuma E, Sakamoto M, Ohkuma M, Nakamura Y, Arita M, Tohno M
Bioscience of microbiota, food and health   36(3) 129-134   2017   [Refereed]
Shimizu T, Tanizawa Y, Mochizuki T, Nagasaki H, Yoshioka T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y
Frontiers in genetics   8 180   2017   [Refereed]
Fujisawa T, Narikawa R, Maeda SI, Watanabe S, Kanesaki Y, Kobayashi K, Nomata J, Hanaoka M, Watanabe M, Ehira S, Suzuki E, Awai K, Nakamura Y
Nucleic acids research   45(D1) D551-D554   Nov 2016   [Refereed]
Shimizu T, Kitajima A, Nonaka K, Yoshioka T, Ohta S, Goto S, Toyoda A, Fujiyama A, Mochizuki T, Nagasaki H, Kaminuma E, Nakamura Y
PloS one   11(11) e0166969   Nov 2016   [Refereed]
Mashima J, Kodama Y, Fujisawa T, Katayama T, Okuda Y, Kaminuma E, Ogasawara O, Okubo K, Nakamura Y, Takagi T
Nucleic acids research   45(D1) D25-D31   Oct 2016   [Refereed]

Misc

 
谷澤 靖洋, 藤澤 貴智, 真島 淳, 李 慶範, 遠野 雅徳, 坂本 光央, 大熊 盛也, 中村 保一, 清水 謙多郎, 門田 幸二
日本乳酸菌学会誌 = Japanese journal of lactic acid bacteria   28(2) 94-100   2017
谷澤 靖洋, 真島 淳, 藤澤 貴智, 李 慶範, 中村 保一, 清水 謙多郎, 門田 幸二
日本乳酸菌学会誌 = Japanese journal of lactic acid bacteria   28(1) 3-11   2017
Tanizawa Yasuhiro, Kaminuma Eli, Nakamura Yasukazu, Tohno Masanori, Terada Tomoko, Shimizu Kentaro, Kadota Koji
Japanese Journal of Lactic Acid Bacteria   27(3) 187-195   2016
Genome finishing still remains a laborious work that includes various validation processes requiring both wet and dry knowledge and consideration, although long-read sequencers such as PacBio RSII have largely contributed to lighten the burden. We...
Tanizawa Yasuhiro, Kaminuma Eli, Nakamura Yasukazu, Tohno Masanori, Osaki Ken, Shimizu Kentaro, Kadota Koji
Japanese Journal of Lactic Acid Bacteria   27(2) 101-110   2016
Long-read sequencing represented by Pacific Biosciences' single-molecule real-time (SMRT) technology has been widely used for microbial genomes. We overview an analysis procedure of Lactobacillus hokkaidonensis LOOC260T genome us...
Tanizawa Yasuhiro, Kaminuma Eli, Nakamura Yasukazu, Shimizu Kentaro, Kadota Koji
Japanese Journal of Lactic Acid Bacteria   27(1) 41-52   2016
<p>Genome assembly is a major task of NGS analyses. For this purpose, many assemblers based on the de Bruijn graph have been developed. In the framework, each node represents a series of overlapping k-mers (k nucleotides) and contigs...

Conference Activities & Talks

 
MarpolDB _ marchantia.info; a genome DB for the Liverwort [Invited]
Yasukazu Nakamura
Renaissance of Marchantia polymorpha   16 Dec 2017   
DDBJ and the INSDC [Invited]
Yasukazu Nakamura
ICG-12   26 Oct 2017   
DDBJ入門 [Invited]
中村 保一
DDBJing 講習会   19 Oct 2017   
DDBJ and the INSDC [Invited]
Yasukazu Nakamura
The Big Data Forum for Life and Health Sciences   10 Oct 2017   
DDBJ
中村 保一
トーゴーの日シンポジウム   5 Oct 2017   
DDBJ [Invited]
Yasukazu Nakamura
GGBN Asian regional workshop   19 Jul 2017   
NBRPゲノム情報等整備プログラムの状況“CyanoBase [Invited]
中村 保一
NBRP藻類・運営会議   4 Jul 2017   
How to make bio-DB’s and services sustainable? [Invited]
Yasukazu Nakamura
CJK Bioinformatics Symposium   20 Jun 2017   
Towards better genome annotation [Invited]
Yasukazu Nakamura
Symposium on Genome Evolution (GEM)   27 Mar 2017   
Genome Sequence of a Rubber tree_Hevea Brasiliensis
Yasukazu Nakamura
IRC2016   26 Oct 2016