論文

2020年5月19日

AnAms1.0: A high-quality chromosome-scale assembly of a domestic cat Felis catus of American Shorthair breed

bioRxiv
  • Sachiko Isobe
  • Yuki Matsumoto
  • Claire Chung
  • Mika Sakamoto
  • Ting-Fung Chan
  • Hideki Hirakawa
  • Genki Ishihara
  • Hon-Ming Lam
  • Shinobu Nakayama
  • Shigemi Sasamoto
  • Yasuhiro Tanizawa
  • Akiko Watanabe
  • Kei Watanabe
  • Masaru Yagura
  • Yasukazu Nakamura
  • 全て表示

DOI
10.1101/2020.05.19.103788
出版者・発行元
Cold Spring Harbor Laboratory

<title>Abstract</title>The domestic cat (<italic>Felis catus</italic>) is one of the most popular companion animals in the world. Comprehensive genomic resources will aid the development and application of veterinary medicine including to improve feline health, in particular, to enable precision medicine which is promising in human application. However, currently available cat genome assemblies were mostly built based on the Abyssinian cat breed which is highly inbred and has limited power in representing the vast diversity of the cat population. Moreover, the current reference assembly remains fragmented with sequences contained in thousands of scaffolds. We constructed a reference-grade chromosome-scale genome assembly of a domestic cat, <italic>Felis catus</italic> genome of American Shorthair breed, Anicom American shorthair 1.0 (AnAms1.0) with high contiguity (scaffold N50 &gt; 120 Mb), by combining multiple advanced genomic technologies, including PacBio long-read sequencing as well as sequence scaffolding by long-range genomic information obtained from Hi-C and optical mapping data. Homology-based and <italic>ab initio</italic> gene annotation was performed with the Iso-Seq data. Analyzed data is be publicly accessible on Cats genome informatics (Cats-I, <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="https://cat.annotation.jp/">https://cat.annotation.jp/</ext-link>), a cat genome database established as a platform to facilitate the accumulation and sharing of genomic resources to improve veterinary care.

リンク情報
DOI
https://doi.org/10.1101/2020.05.19.103788
URL
https://syndication.highwire.org/content/doi/10.1101/2020.05.19.103788
ID情報
  • DOI : 10.1101/2020.05.19.103788

エクスポート
BibTeX RIS