Xiucai Ye

Profile Information

Affiliation: Associate Professor, Institute of Systems and Information Engineering, University of Tsukuba

J-GLOBAL ID: 201701019433059313
researchmap Member ID: B000273999

Research Interests

Feature Selection, Clustering, Classification, Machine Learning, Data Analysis, Bioinformatics, Network Computing
Feature Selection, Clustering, Classification, Machine Learning, Data Analysis, Wireless Sensor Networks, Network Computing

Research Areas

Informatics / Mathematical informatics /

Research History

Apr, 2018 - Dec, 2023

Assistant Professor, Faculty of Engineering,Information and Systems, University of Tsukuba
Jul, 2014 - Mar, 2018

Postdoctoral Researcher, Faculty of Engineering,Information and Systems, University of Tsukuba
May, 2014 - Jun, 2014

Postdoctoral Researcher, Faculty of Engineering,Information and Systems, University of Tsukuba
Apr, 2014 - Jun, 2014

Postdoctoral Researcher, Faculty of Engineering,Information and Systems, University of Tsukuba

Education

Apr, 2010 - Mar, 2014

Department of Computer Science, Graduate School of Systems and Information Engnieering, University of Tsukuba

Committee Memberships

Jun, 2022 - May, 2023

Technical Program Committee, The 7th International Conference on Medical and Health Informatics
Aug, 2022 - Feb, 2023

Technical Program Committee, The 15th International Conference on Machine Learning and Computing
Sep, 2022 - Nov, 2022

Program Committee, The Thirty-Seven AAAI Conference on Artificial Intelligence
Mar, 2022 - Jun, 2022

Guest Editor, Technology in Cancer Research & Treatment Special Issue on Medical Informatics in Precision Medicine
Mar, 2022 - Jun, 2022

Guest Editor, Technology in Cancer Research & Treatment Special Issue on Medical Informatics in Precision Medicine (SI)
Mar, 2022 - Jun, 2022

Guest Editor, Technology in Cancer Research & Treatment: Medical Informatics in Precision Medicine (SI)
Mar, 2022 - Jun, 2022

Guest Editor, Technology in Cancer Research & Treatment: Medical Informatics in Precision Medicine (SI)
Jan, 2022 - May, 2022

Guest Editor, Frontiers in Plant Science Special Issue on Machine Learning on Understanding the Epigenetic Mechanisms Underlying Plant Adaptation and Domestication
Jan, 2022 - May, 2022

Guest Editor
Nov, 2021 - May, 2022

Technical Program Committee, 2022 IEEE International Conference on Communications (ICC): Cognitive Radio and AI-Enabled Networks
Nov, 2021 - May, 2022

Technical Program Committee, 2022 IEEE International Conference on Communications (ICC): Cognitive Radio and AI-Enabled Networks
Jun, 2021 - May, 2022

Technical Program Committee, The 6th International Conference on Medical and Health Informatics
Jun, 2021 - May, 2022

Technical Program Committee, The 6th International Conference on Medical and Health Informatics
Nov, 2021 - Mar, 2022

Guest Editor, Computational and Mathematical Methods in Medicine Special Issue on Artificial Intelligence for Biological Sequence and Functional Analysis
Nov, 2021 - Mar, 2022

Guest Editor, Computational and Mathematical Methods in Medicine: Artificial Intelligence for Biological Sequence and Functional Analysis (SI)
Aug, 2021 - Feb, 2022

Technical Program Committee, The 14th International Conference on Machine Learning and Computing
Sep, 2021 - Nov, 2021

Program Committee, The Thirty-Sixth AAAI Conference on Artificial Intelligence
Sep, 2021 - Nov, 2021

Program Committee, The Thirty-Sixth AAAI Conference on Artificial Intelligence
May, 2021 - Nov, 2021

Program Committee, The 7th International Symposium on Security and Privacy in Social Networks and Big Data
May, 2021 - Nov, 2021

Program Committee, The 7th International Symposium on Security and Privacy in Social Networks and Big Data

Awards

May, 2019

Excellent Oral Presentation Award, Award from International Conference on Medical and Health Informatics (ICMHI)

Xiucai Ye, Hongmin Li, Tetsuya Sakurai, Pei-Wei Shueng
May, 2019

International Conference ICMHI Excellent Oral Presentation Award

Xiucai Ye, Hongmin Li, Tetsuya Sakurai, Pei-Wei Shueng
Oct, 2018

Best Paper Award, Award from IEEE International Conference on Cloud and Big Data Computing (CBDCom), IEEE International Conference on Cloud and Big Data Computing (CBDCom)

Xiucai Ye, Hongmin Li, Tetsuya Sakurai, Zhi Liu
Oct, 2018

IEEE International Conference CBDCom Best Paper Award, IEEE International Conference on Cloud and Big Data Computing (CBDCom)

Xiucai Ye, Hongmin Li, Tetsuya Sakurai, Zhi Liu
May, 2017

Best Paper Award, Award from International Conference on Medical and Health Informatics (ICMHI)

Xiucai Ye, Tetsuya Sakurai
May, 2017

International Conference ICMHI Best Paper Award

Xiucai Ye, Tetsuya Sakurai
Feb, 2017

Excellent Oral Presentation Award, Award from International Conference on Machine Learning and Computing (ICMLC), ９th International Conference on Machine Learning and Computing (ICMLC)

Xiucai Ye, Tetsuya Sakurai
Feb, 2017

International Conference ICMLC Excellent Oral Presentation Award, ９th International Conference on Machine Learning and Computing (ICMLC)

Xiucai Ye, Tetsuya Sakurai
Feb, 2016

Excellent Oral Presentation Award, Award from International Conference on Machine Learning and Computing (ICMLC), 8th International Conference on Machine Learning and Computing (ICMLC)

Xiucai Ye, Kaiyang Ji, Tetsuya Sakurai
Feb, 2016

International Conference ICMLC Excellent Oral Presentation Award, 8th International Conference on Machine Learning and Computing (ICMLC)

Xiucai Ye, Kaiyang Ji, Tetsuya Sakurai
Mar, 2014

Student Excellent Research Award from Chairperson of the department, University of Tsukuba

Papers

PPDF-FedTMI: A Federated Learning-based Transport Mode Inference Model with Privacy-Preserving Data Fusion

Huang, Qihan, Zhang, Jing, Zeng, Zuanyang, He, Ding, Ye, Xiucai, Chen, Yi

SIMULATION MODELLING PRACTICE AND THEORY, 129, Dec, 2023 Peer-reviewed
Pick-up point recommendation strategy based on user incentive mechanism

Zhang, Jing, Li, Biao, Ye, Xiucai, Chen, Yi

PEERJ COMPUTER SCIENCE, 9, Nov, 2023 Peer-reviewed
Multi-omics clustering for cancer subtyping based on latent subspace learning

Ye, Xiucai, Shang, Yifan, Shi, Tianyi, Zhang, Weihang, Sakurai, Tetsuya

COMPUTERS IN BIOLOGY AND MEDICINE, 164, Sep, 2023 Peer-reviewed
Common and Unique Features Learning in Multi-view Network Embedding

Shang, Yifan, Ye, Xiucai, Sakurai, Tetsuya

Proceedings of the International Joint Conference on Neural Networks 2023, (accepted) 1-8, Jul, 2023 Peer-reviewedCorresponding author
Multi-view Network Embedding with Structure and Semantic Contrastive Learning

Shang, Yifan, Ye, Xiucai, Sakurai, Tetsuya

Proceedings of the IEEE International Conference on Multimedia and Expo (ICME 2023), (accepted) 870-875, Jul, 2023 Peer-reviewedCorresponding author
Hasse sensitivity level: A sensitivity-aware trajectory privacy-enhanced framework with Reinforcement Learning

Zhang, Jing, Huang, Yi-rui, Huang, Qi-han, Li, Yan-zi, Ye, Xiucai

Future Generation Computer Systems, 142 301-313, May, 2023 Peer-reviewed
Molecular language models: RNNs or transformer?

Chen, Yangyang, Wang, Zixu, Zeng, Xiangxiang, Li, Yayang, Li, Pengyong, Ye, Xiucai, Sakurai, Tetsuya

BRIEFINGS IN FUNCTIONAL GENOMICS, 22(4) 392-400, Apr, 2023 Peer-reviewedCorresponding author
MRMD3. 0: A Python tool and webserver for dimensionality reduction and data visualization via an ensemble strategy

He, Shida, Ye, Xiucai, Sakurai, Tetsuya, Zou, Quan

JOURNAL OF MOLECULAR BIOLOGY, 435(14), Apr, 2023 Peer-reviewed
m5U-SVM: identification of RNA 5-methyluridine modification sites based on multi-view features of physicochemical features and distributed representation

Ao, Chunyan, Ye, Xiucai, Sakurai, Tetsuya, Zou, Quan, Yu, Liang

BMC biology, 21(1), Apr, 2023 Peer-reviewed
Dimension-aware under spatiotemporal constraints: an efficient privacy-preserving framework with peak density clustering

Zhang, Jing, Huang, Qihan, Hu, Jian-Yu, Ye, Xiucai

The Journal of Supercomputing, 79(4) 4164-4191, Mar, 2023 Peer-reviewed
A novel Sybil attack detection scheme in mobile IoT based on collaborate edge computing

Yan, Junwei, Tao Jiang, Lin, Liwei, Wu, Zhengyu, Ye, Xiucai, Tian, Mengke, Wang, Yong

EURASIP JOURNAL ON WIRELESS COMMUNICATIONS AND NETWORKING, 2023(1), Mar, 2023 Peer-reviewed
Deep generative model for drug design from protein target sequence

Chen, Yangyang, Wang, Zixu, Wang, Lei, Wang, Jianmin, Li, Pengyong, Cao, Dongsheng, Zeng, Xiangxiang, Ye, Xiucai, Sakurai, Tetsuya

JOURNAL OF CHEMINFORMATICS, 15(1), Mar, 2023 Peer-reviewedCorresponding author
Interactive gene identification for cancer subtyping based on multi-omics clustering

Ye, Xiucai, Shi, Tianyi, Cui, Yaxuan, Sakurai, Tetsuya

METHODS, 211 61-67, Mar, 2023 Peer-reviewedCorresponding author
Bidirectional k-nearest neighbor spatial crowdsourcing allocation protocol based on edge computing.

Zhang, Jing, Ding, Qian, Li, Biao, Ye, Xiucai

PEERJ COMPUTER SCIENCE, 9, Feb, 2023 Peer-reviewed
SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning

Zhang, Xin, Wei, lesong, Ye, Xiucai, Zhang, Kai, Teng, Saisai, Li, Zhongshen, Jin, Junru, Kim, Min Jae, Sakurai, Tetsuya, Cui, Lizhen …

BRIEFINGS IN BIOINFORMATICS, 24(1), Jan, 2023 Peer-reviewed
Distortion-free PCA on Sample Space for Highly Variable Gene Detection from Single-cell RNA-seq Data

Matsuda, Momo, Futamura, Yasunori, Ye, Xiucai, Sakurai, Tetsuya

Frontiers of Computer Science, 17(1), Jan, 2023 Peer-reviewed
LSEC: Large-scale spectral ensemble clustering

Li, Hongmin, Ye, Xiucai, Imakura, Akira, Sakurai, Tetsuya

INTELLIGENT DATA ANALYSIS, 27(1) 59-77, Jan, 2023 Peer-reviewed
Enhanced Authenticated Key Agreement for Surgical Applications in a Tactile Internet Environment

Lee, Tian-Fu, Ye, Xiucai, Chen, Wei-Yu, Chang, Chi-Chang

SENSORS, 22(20), Oct, 2022
Knowledge distillation-based privacy-preserving data analysis.

Huang, Dong, Ye, Xiucai, Sakurai, Tetsuya

Proceedings of the Conference on Research in Adaptive and Convergent Systems, 15-20, Oct, 2022 Peer-reviewedCorresponding author
ToxinMI: improving peptide toxicity prediction by fusing multimodal information based on mutual information

Wei, lesong, Ye, Xiucai, Sakurai., Tetsuya

Proceedings of the Conference on Research in Adaptive and Convergent Systems, 77-82, Oct, 2022 Peer-reviewedCorresponding author

Presentations

Multi-view Network Embedding with Structure and Semantic Contrastive Learning

Shang, Yifan, Ye, Xiucai, Sakurai, Tetsuya

IEEE International Conference on Multimedia and Expo (ICME2023)
Common and Unique Features Learning in Multi-view Network Embedding

Yifan, Shang, Xiucai, Ye, Tetsuya, Sakurai

International Joint Conference on Neural Networks (IJCNN2023)
Improving Prediction of SARS CoV2 Phosphorylation Sites Using Adaptive Learning Embedding Features

Jiao, Shihu, Ye, Xiucai, Sakurai, Tetsuya

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
Enhancing Compound Screening Effectiveness in Drug Research by Refining Screening Approaches

Ru, Xiaoqing, Ye, Xiucai, Sakurai, Tetsuya

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
Discovering Cancers Subtypes Based on Multi-omics Clustering

Tianyi, Shi, Xiucai, Ye, Tetsuya, Sakurai

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
scGNGI: Imputing Missing Gene Expression Value with Cell Heterogeneity Based on Low Rank Matrix Recovery

Huang, Meng, Ye, Xiucai, Sakurai, Tetsuya

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
DeepDMPred:Multi view Feature Fusion Method to Predict Drug Molecules

He, Shida, Ye, Xiucai, Sakurai, Tetsuya

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
Im proving P rediction of SARS CoV 2 Phosphorylation Sites Using Adaptive Learning Embedding Features

Jiao, Shihu, Ye, Xiucai, Sakurai, Tetsuya

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
Enhancing Compound Screening Effectiveness in Dr ug Re search by Refining Screening Approaches

Ru, Xiaoqing, Ye, Xiucai, Sakurai, Tetsuya

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
Discovering Cancers Subtypes B ased on Multi-omics Clustering

Tianyi, Shi, Xiucai, Ye, Tetsuya, Sakurai

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
scGNGI: Imputing Missing Gene Expression Value with Cell Heterogeneity Based o n Low Rank Matrix Recovery

Huang, Meng, Ye, Xiucai, Sakurai, Tetsuya

The 7th International Conference on Medical and Health Informatics (ICMHI 2023)
Cost-Efficient Integrated Analysis of Distributed Data in Secure Environments

Sakurai, Tetsuya, Imakura, Akira, Ye, Xiucai, Bogdanova, Anna, Futamura, Yasunori, Okada, Yukihiko, Shigezumi, Takeya, Eguchi, Hiroyuki, Yamanaka, Hiroyuki

SIAM Conference on Computational Science and Engineering (CSE23)
Collaborative Future Selection for Distributed Data

Ye, Xiucai, Imakura, Akira, Sakurai, Tetsuya

SIAM Conference on Computational Science and Engineering (CSE23)
Multiview Network Embedding for Drug-target Interaction Prediction

Ye, Xiucai, Shang, Yifan, Futamura, Yasunori, Sakurai, Tetsuya

15th International Conference on Machine Learning and Computing (ICMLC) Invited
Knowledge distillation-based privacy-preserving data analysis

Huang, Dong, Ye, Xiucai, Sakurai, Tetsuya

The Conference on Research in Adaptive and Convergent Systems
ToxinMI: improving peptide toxicity prediction by fusing multimodal information based on mutual information

Wei, Lesong, Ye, Xiucai, Sakurai, Tetsuya

The Conference on Research in Adaptive and Convergent Systems
Ensemble Learning for Cluster Number Detection Based on Shared Nearest Neighbor Graph and Spectral Clustering

Zhang, Weihang, Ye, Xiucai, Sakurai, Tetsuya

International Joint Conference on Neural Networks (IJCNN 2022), Jul 18, 2022
Sequential Active Gene Selection in Renal Cell Carcinoma

Huang, Meng, Ye, Xiucai, Imakura, Akira, Sakurai, Tetsuya

6th International Conference on Medical and Health Informatics, May 13, 2022
Advantages of Learning to Rank in Compound-protein Associations Prediction

Ru, Xiaoqing, Ye, Xiucai, Sakurai, Tetsuya, Zou, Quan

6th International Conference on Medical and Health Informatics, May 13, 2022
Multi-view Network Embedding for Drug-target Interactions Prediction

Shang, Yifan, Ye, Xiucai, Futamura, Yasunori, Yu, Liang, Sakurai, Tetsuya

6th International Conference on Medical and Health Informatics, May 13, 2022

Professional Memberships

Dec, 2018 - Present

AAAI
Apr, 2017 - Present

CBEES
Jan, 2014 - Present

IEEE

Research Projects

制約付き固有値問題に基づく局所潜在空間生成とその大規模分散データ解析への応用

科学研究費助成事業, 基盤研究(B), 日本学術振興会, Apr, 2023 - Mar, 2028

櫻井鉄也, 今倉暁, 二村保徳, 叶秀彩, BOGDANOVA ANNA

Industrial Property Rights

特願2019-104396 特徴量選択支援装置、特徴量選択支援プログラム及び特徴量選択支援方法

今倉, 暁, 叶, 秀彩, 櫻井, 鉄也

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