Yuji Inagaki

Profile Information

Affiliation: Professor, Center for Computational Sciences, University of Tsukuba

J-GLOBAL ID: 200901086154329960
researchmap Member ID: 5000076629

Research Areas

Research History

Apr, 2016 - Present

Center for Computational Sciences, University of Tsukuba

Awards

Aug, 2008

日本進化学会研究奨励賞, 日本進化学会

稲垣祐司
Apr, 2007

科学技術分野の文部科学大臣表彰若手科学者賞, 文部科学省

稲垣祐司
Apr, 1993

公益信託森安大学院生奨学基金

稲垣祐司

Papers

135

Convergent reductive evolution of cyanobacteria in symbiosis with Dinophysiales dinoflagellates.

Nakayama, Takuro, Yabuki, Akinori, Nomura, Mami, Shiba, Kogiku, Inaba, Kazuo, Inagaki, Yuji

bioRχiv, Jan, 2024
Encyclopaedia of family A DNA polymerases localized in organelles: Evolutionary contribution of bacteria including the proto-mitochodrion.

Harada, Ryo, Hirakawa, Yoshihisa, Yabuki, Akinori, Kim, Eunsoo, Yazaki, Euki, Kamikawa, Ryoma, Kentaro, Nakano, Eliáš, Marek, Inagaki, Yuji

Molecular Biology and Evolution, 41(2) msae014, Jan, 2024 Peer-reviewedCorresponding author
Gleaning Euglenozoa-specific DNA polymerases in public single-cell transcriptome data.

Harada, Ryo, Inagaki, Yuji

Protist, 174(6) 125997, Dec, 2023 Peer-reviewedCorresponding author
Transcriptome data sets of free-living diplomonads, Treponema sp, and Hexamita sp.

Kume, Keitaro, Tsubasa, Gen, Kazuki, Abe, Hiroshi, Komatsuzaki, Euki, Yazaki, Goro, Tanifuji, Ryoma, Kamikawa, Inagaki, Yuji, Hashimoto, Tetsuo

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 12(11) e0050623-e0050623, Nov, 2023 Peer-reviewed
AtLASS: A scheme for end-to-end prediction of splice sites using attention-based bi-LSTM.

Harada, Ryo, Kume, Keitaro, Horie, Kazumasa, Nakayama, Takuro, Inagaki, Yuji, Amagasa, Toshiyuki

IPSJ Transactions on Bioinformatics, 16 20-27, Jul, 2023 Peer-reviewed
遺伝子水平伝播が支配するオルガネラ局在ファミリーA DNAポリメラーゼの進化

原田亮, 稲垣, 祐司

月刊細胞, 55(6) 33-36, Apr, 2023 Corresponding author
Fascinating strategies of marine organisms to cope with coming pollutant: Titanium dioxide nanoparticles.

Ishitani, Yoshiyuki, Ciacci, Caterina, Ujiié, Yurika, Tame, Akihiro, Tiboni, Mattia, Tanifuji, Goro, Inagaki, Yuji, Frontalini, Fabrizio

ENVIRONMENTAL POLLUTION, 330 121538-121538, Apr, 2023 Peer-reviewed
Draft genome sequence of Aduncisulcus paluster, a free-living microaerophilic eukaryote belonging to Fornicata.

Ikuko, Yuyama, Kume, Keitaro, Tamura, Takumi, Inagaki, Yuji, Hashimoto, Tetsuo

Microbiology Resource Announcements, 12(2) e0053922, Feb, 2023 Peer-reviewed
Microheliella maris possesses the most gene-rich mitochondrial genomes in Diaphoretickes.

Yazaki, Euki, Yabuki, Akinori, Nishimura, Yuki, Shiratori, Takashi, Inagaki, Yuji

Frontiers in Ecology and Evolution, 10 1030570, Dec, 2022 Peer-reviewedLast author
A novel structural maintenance of chromosomes (SMC)-related protein family specific to Archaea

Yoshinaga, Mari, Nakayama, Takuro, Inagaki, Yuji

Frontiers in Microbiology, 13 913088, Aug, 2022 Peer-reviewedLast authorCorresponding author
Comparative Plastid Genomics of Green-Colored Dinoflagellates Unveils Parallel Genome Compaction and RNA Editing

Eriko, Matsuo, Kounosuke, Morita, Takuro, Nakayama, Yazaki, Euki, Chihiro, Sarai, Kazuya, Takahashi, Mitsunori, Iwataki, Inagaki, Yuji

FRONTIERS IN PLANT SCIENCE, 13 918543, Jul, 2022 Peer-reviewedCorresponding author
The closest relative of Archaeplastida is revealed by phylogenomic analyses that include Microheliella maris.

Yazaki, Euki, Yabuki, Akinori, Imaizumi, Ayaka, Kume, Keitaro, Hashimoto, Tetsuo, Inagaki, Yuji

OPEN BIOLOGY, 12(4) 210376-210376, Apr, 2022 Peer-reviewedLast author
Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes

Mari Yoshinaga, Yuji Inagaki

Genome Biology and Evolution, 13(12), Dec 1, 2021 Peer-reviewedCorresponding author
Phylogenomics invokes the clade housing Cryptista, Archaeplastida, and Microheliella maris.

Yazaki, Euki, Yabuki, Akinori, Imaizumi, Ayaka, Kume, Keitaro, Hashimoto, Tetsuo, Inagaki, Yuji

bioRχiv, Aug, 2021 Last author
Signs of the plastid: Enzymes involved in plastid-localized metabolic pathways in a eugregarine species

Yazaki, Euki, Miyata, Ryosuke, Chikami, Yasuhiko, Harada, Ryo, Kawakubo, Takashi, Tanifuji, Goro, Nakayama, Takuro, Yahata, Kensuke, Hashimoto, Tetsuo, Inagaki, Yuji

Parasitology International, 83 102364-102364, Aug, 2021 Peer-reviewedCorresponding author
Phage origin of mitochondrion-localized family A DNA polymerases in kinetoplastids and diplonemids.

Ryo, Harada, Inagaki, Yuji

Genome Biology and Evolution, Jan, 2021 Peer-reviewedCorresponding author
Experimental analysis of diurnal variations in humic-like fluorescent dissolved organic matters in surface seawater.

Omori, Yuko, Saeki, AKira, Wada, Shigeki, Inagaki, Yuji, Hama, Takeo

Frontiers in Marine Science, 7 589064, Oct, 2020 Peer-reviewed
Barthelonids represent a deep-branching matamonad clade with mitochondrion-related organelles predicted to generate no ATP.

Euki, Yazaki, Kume, Keitaro, Takashi, Shiratori, Yana, Eglit, Goro, Tanifuji, Ryo, Harada, Alastair, Simpson, Ken-ichiro, Ishida, Tetsuo, Hashimoto, Inagaki, Yuji

Proceedings of the Royal Society B, 287(1934) 20201538-20201538, Sep, 2020 Peer-reviewedLast authorCorresponding author
Putative genome features of relic green alga-derived nuclei in dinoflagellates and future perspectives as model organisms

Takuro Nakayama, Kazuya Takahashi, Ryoma Kamikawa, Mitsunori Iwataki, Yuji Inagaki, Goro Tanifuji

Communicative & Integrative Biology, 13(1) 84-88, Jun 21, 2020 Peer-reviewed
Mitochondrial genomes of Hemiarma marina and Leucocryptos marina revised the evolution of cytochrome c maturation in Cryptista.

Yuki Nishimura, Keitaro Kume, Keito Sonehara, Goro Tanifuji, Takashi Shiratori, Ken-ichiro Ishida, Tetsuo Hashimoto, Yuji Inagaki, Moriya Ohkuma

May, 2020 Peer-reviewedCorresponding author

Misc.

109

緑色渦鞭毛藻Lepidodinium chlorophorumにおけるヌクレオモルフゲノムの存在検証

中山卓郎, 稲垣祐司

藻類, 70(1), 2022
一次共生型の光合成アメーバにおけるDNAウイルスを介した大規模遺伝子転移

松尾充啓, 潟端篤, 立川誠, 水口洋平, 野口英樹, 豊田敦, 藤山秋佐夫, 鈴木穣, 佐藤壮一郎, 中山卓郎 …

日本植物生理学会年会(Web), 60th, 2019
翻訳伸長因子EF-1α及びEFLのインシリコモデル構造解析

坂本航太郎, 栢沼愛, 稲垣祐司, 橋本哲男, 重田育照

生体分子科学討論会講演要旨集, 46th, 2019
外洋性渦鞭毛藻Ornithocercus magnificusに見られる共生シアノバクテリアのゲノム解析

中山卓郎, 高野義人, 野村真未, 柴小菊, 稲葉一男, 谷藤吾朗, 河田雅圭, 稲垣祐司

藻類, 66(1) 73, Mar 10, 2018
セスジアカムカデ中のグレガリナ様寄生虫における非光合成性色素体

宮田凌佑, 松尾恵梨子, 中山卓郎, 谷藤吾朗, 千頭康彦, 八畑謙介, 橋本哲男, 橋本哲男, 橋本哲男, 稲垣祐司 …

藻類, 65(1), 2017
有殻アメーバのゲノム解読による一次細胞内共生進化の初期プロセスの解析

松尾充啓, 潟端篤, 立川誠, 水口洋平, 野口英樹, 豊田敦, 藤山秋佐夫, 鈴木穣, 中山卓郎, 神川龍馬 …

日本植物学会大会研究発表記録, 81st, 2017
セスジアカムカデ消化管内寄生虫の網羅的mRNAデータに基づくアピコンプレクサの初期進化に関する一考察

宮田凌佑, 松尾恵梨子, 中山卓郎, 谷藤吾朗, 千頭康彦, 八畑謙介, 稲垣祐司, 稲垣祐司

日本進化学会大会プログラム・講演要旨集(Web), 19th, 2017
Rare loss of the Calvin Benson cycle in non-photosynthetic plastids

Kamikawa R, Zauner S, Moog D, Tanifuji G, Ishida KI, Mayama S, Hashimoto T, Archibald JM, Maier UG, Miyashita H …

ICES2016 Kyoto, Sep, 2016
非光合成性珪藻類無色葉緑体における機能

神川龍馬, ZAUNER Stefan, MAIER Uwe, MOOG Daniel, ARCHIBALD John M, ROGER Andrew J, 真山茂樹, 石田健一郎, 宮下英明, 稲垣祐司

藻類, 64(1) 55, Mar 10, 2016
シアノバクテリアと真核藻類の細胞統合 : 「窒素固定オルガネラ」へ続く道? (特集真核細胞の共生由来オルガネラ研究最前線 : 広がり続ける多様性と機能)

中山卓郎, 稲垣祐司

遺伝 : 生物の科学, 70(2) 121-125, Mar, 2016
窒素固定シアノバクテリア共生体をもつ珪藻の核ゲノム解析:核コード共生体制御遺伝子の探索

中山卓郎, 稲垣祐司

日本植物学会大会研究発表記録, 80th, 2016
窒素固定はじめました-Rhopalodia科珪藻に見る細胞内共生進化

中山卓郎, 神川龍馬, 谷藤吾朗, 稲垣祐司

日本進化学会大会プログラム・講演要旨集(Web), 18th, 2016
ヌクレオモルフをもつ2種の未記載渦鞭毛藻：「真核－真核型」細胞内共生を介した葉緑体成立過程を解き明かす新たなモデルとして.

皿井千裕, 谷藤吾朗, 中山卓郎, 神川龍馬, 高橋和也, 石田健一郎, 岩滝光儀, 稲垣祐司

日本進化学会第17回大会, 17th, Aug, 2015
新奇緑色渦鞭毛藻鶴岡株・室蘭株の葉緑体ゲノム比較解析

森田幸之介, 谷藤吾朗, 中山卓郎, 神川龍馬, 皿井千裕, 高橋和也, 岩滝光儀, 稲垣祐司

日本藻類学会第39回大会, 63(1), Mar, 2015
山形県鶴岡産緑色渦鞭毛藻TRD132株の細胞内微細構造

皿井千裕, 高橋和也, 谷藤吾朗, 中山卓郎, 神川龍馬, 稲垣祐司, 石田健一郎, 岩滝光儀

日本藻類学会第39回大会, 63(1), Mar, 2015
新奇緑色渦鞭毛藻類における緑藻遺伝子の網羅的探索 ― 新たなヌクレオモルフゲノムへの示唆

中山卓郎, 谷藤吾朗, 神川龍馬, 皿井千裕, 松尾恵梨子, 高橋和也, 岩滝光儀, 稲垣祐司

日本藻類学会第39回大会, 63(1), Mar, 2015
嫌気性ストラメノパイル生物Cantina marsupialisが有するミトコンドリア関連オルガネラの代謝能推定

野口文哉, 野口文哉, 島村繁, 中山卓郎, 矢崎裕規, 橋本哲男, 稲垣祐司, 藤倉克則, 藤倉克則, 瀧下清貴

藻類, 63(1), 2015
嫌気性ストラメノパイル生物Cantina marsupialisが有するミトコンドリア関連オルガネラの代謝能推定

野口文哉, 島村繁, 中山卓郎, 矢崎裕規, 橋本哲男, 稲垣祐司, 藤倉克則, 瀧下清貴

ブルーアース要旨集, 2015, 2015
Comparative genome analysis of pedinophyte plastids and the pedinophyte-derived plastids in two dinoflagellates Lepidodinium chlorophorum and strain MRD-151.

Kounosuke Morita, Goro Tanifuji, Takuro Nakayama, Ryoma Kamikawa, Chihiro Sarai, Kazuya Takahashi, Mitsunori Iwataki, Yuji Inagaki

VII ECOP-ISOP Joint Meeting, 2015
有殻アメーバPaulinella chromatophoraのゲノム解析

松尾充啓, 潟端篤, 水口洋平, 野口英樹, 豊田敦, 藤山秋佐夫, 鈴木穣, 佐藤壮一郎, 松崎素道, 中山卓郎 …

第37回日本分子生物学会年会, 37th, Nov, 2014

Books and Other Publications

共生微生物

稲垣,祐司, 中山卓郎 (Role: Contributor, 第17章現在も続く細胞内共生細菌のオルガネラ化．)

化学同人, Oct, 2016 (ISBN: 9784759817287)
Reference modules in Materials Science and Engineering 2016

Harada, Ryuhei, Inagaki, Yuji, Shigeta, Yasuteru (Role: Contributor, Protein Folding and Evolution)

Jun, 2016
ロングブランチの誘惑--分子系統解析のダークサイド

稲垣祐司 (Role: Supervisor (editorial))

The Japanese Journal of Phycology, Jul, 2007
アピコンプレクサ類の退化葉緑体は緑藻起源か？

稲垣祐司 (Role: Supervisor (editorial))

The Japanese Journal of Phycology, Jan, 2004

Presentations

147

Morphology, ultrastructure and phylogeny of a new species of Glissandra (Protista incertae sedis).

Shiratori, Takashi, Yazaki, Euki, Inagaki, Yuji, Ishida, Ken-ichiro

ICOP2017, Jul 31, 2017
光合成関連遺伝子に着目した緑色渦鞭毛藻TGD株のヌクレオモルフゲノムの解析．

藤代彩花, 磯貝龍邑, 高橋和也, 岩滝光儀, 稲垣, 祐司, 中山卓郎

日本藻類学会第48回大会
Transition of the gene repertoire with adaptation to parasitic lifestyle in Diplomonads: orthology analysis with related free-living species

久米, 慶太郎, 若島, 朋幸, 厳, 翼, 岩本, 亮介, 井上, 貴史, 谷藤, 吾朗, 神川, 龍馬, 稲垣, 祐司, 橋本, 哲男

The 93rd Annual Meeting of the Japanese Society of Parasitology
A novel form of Rubisco that is ancestral to forms I and I’.

番場浩平, 稲垣, 祐司

日本共生生物学会第7回大会
Evolution of PCNA complex in Crenarchaota.

上西慧莉紗, 原田亮, 吉永真理, 稲垣, 祐司

日本共生生物学会第7回大会
Taxon sampling affects the internal relationship of Archaeplastida: Is either Rhodophyta or Glaucophyta the earliest branch in Archaeplastida?

磯貝龍邑, 原田亮, 中山卓郎, 稲垣, 祐司

日本共生生物学会第7回大会
Exploring symbiotic cyanobacteria using size-fractionated environmental DNA samples.

宮本知世, 矢吹彬憲, 野村真未, 柴小菊, 稲葉一男, 稲垣, 祐司, 中山卓郎

日本共生生物学会第7回大会
寄生性ユーグレナ類Euglenaformis parasiticaにおける非光合成性葉緑体の存在とその機能

加藤孝一朗, 南波紀昭, 稲垣, 祐司, 中山剛, 中山卓郎

日本植物学会第87回大会
Evolution and switching of mitochondrion-localized DNA polymerases in Euglenozoa.

Ryo, Harada, Hirakawa, Yoshihisa, Yabuki, Akinori, Kim, Ensoo, Yazaki, Euki, Ryoma, Kamikawa, Nakano, Kentaro, Eliáš, Marek, Inagaki, Yuji

3ʳᵈ Annual International Congress on Euglenoids 2023
Repeated haptophyte endosymbioses in the dinoflagellate family Kareniaceae.

Inagaki, Yuji, Benico, Garry, Takahashi, Kazuya, Ryo, Harada, Martinek, Inga, Maciszewski, Kacper, Nakayama, Takuro, Iwataki, Mitsunori, Kolisko, Martin, Hehenberger, Elisabeth

IX ECOP-ISOP joint meeting 2023
Impact of taxon sampling on the relationship among Rhodophyta, Glaucophyta, and Chloroplastida inferred from nuclear gene-based phylogenomic analyses.

Isogai, Ryu, Ryo, Harada, Nakayama, Takuro, Inagaki, Yuji

IX ECOP-ISOP joint meeting 2023
A non-kareniacean dinoflagellate with a haptophyte-derived plastid indicates multiple tertiary endosymbioses.

Takahashi, Kazuya, Nakayama, Takuro, Inagaki, Yuji, Hehenberger, Elisabeth, Iwataki, Mitsunori

IX ECOP-ISOP joint meeting 2023
Has the DNA polymerase of the proto-mitochondrion been retained in Discoba, Malawimonadidae, and Ancyromonadida?: a novel mitochondrion-localized DNA polymerase with the phylogenetic affinity to the alpha-proteobacterial PolI.

Ryo, Harada, Inagaki, Yuji

IX ECOP-ISOP joint meeting 2023
AtLASS: A Scheme for end-to-end prediction of splice sites using attention-based bi-LSTM.

原田亮, 久米慶太郎, 堀江和正, 中山卓郎, 稲垣, 祐司, 天笠俊之

第74回バイオ情報学(SIGBIO)研究会
最尤系統樹中の2分岐の信頼性に対する新たな評価手法．

番場浩平, 稲垣, 祐司, 原田亮, 中山卓郎, 磯貝龍邑

第74回バイオ情報学(SIGBIO)研究会
Search for free-living-related proteins in free-living diplomonads that transitioned from a parasitic ancestor

厳翼, 久米慶太郎, 阿部一貴, 矢﨑裕規, 小松崎洋志, 谷藤吾朗, 神川龍馬, 稲垣, 祐司, 橋本哲男

第92回寄生虫学会大会
真核生物の大系統：最近の研究成果から見る多様性の広がり、まとまり、今後の展望

稲垣, 祐司

第92回寄生虫学会大会サテライトシンポジウム原生生物学・共生生物学談話会 Invited
Serial secondary and serial tertiary endosymbioses in dinoflagellates.

Inagaki, Yuji

ICG seminor Invited
Recent progress in resolving the diversity and evolution of deep eukaryotic phylogeny

Inagaki, Yuji

ISEP23, Jan 20, 2023 Invited
A factor that hinders the accurate phylogenetic inferences: The monophyly of Archaeplastida as a case study.

Inagaki, Yuji

EPCC-CCS Workshop 2022, Dec 14, 2022 Invited

Professional Memberships

2008 - Present

International Society of Protistologists
2005 - Present

THE JAPANESE SOCIETY OF PHYCOLOGY
2004 - Present

Society for Molecular Biology and Evolution
2004 - Present

The Molecular Biology Society of Japan
2004 - Present

SOCIETY OF EVOLUTIONARY STUDIES, JAPAN
- Present

International Society for Evolutionary Protistology

Research Projects

ミトコンドリアDNAポリメラーゼの多様性と進化の全容解明

科学研究費基盤研究(B), 日本学術振興会, 2019 - 2023

稲垣祐司
海洋原生生物に共生する細菌多様性の実態解明

国際共同研究加速基金（国際共同研究強化(B)）, 国際共同研究加速基金(国際共同研究強化(B)), 日本学術振興会, 2018 - 2022

稲垣祐司
Elucidation of evolutionary process of light adaptation in a course of loss of photosynthesis.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2017 - 2020

Tanifuji Goro
Study on the residual green alga-derived nucleomorphs in dinoflagellates

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2016 - Mar, 2019

Inagaki Yuji
海洋バクテリアの長期炭素隔離機能に対する海洋酸性化の影響評価

科学研究費補助金基盤研究(B), 日本学術振興会, 2016 - 2019

濱健夫
Diversity and evolution of anaerobic/microaerophilic eukaryotic microorganisms

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2015 - Mar, 2018

HASHIMOTO Tetsuo, HANZAWA Naoto
Splicing mechanism of novel introns in a split form and their evolutionary diversity

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2015 - Mar, 2018

HASHIMOTO Tetsuo
マトリョーシカ型進化原理の展開

科学研究費助成事業, 新学術領域研究(研究領域提案型), 日本学術振興会, Apr, 2016 - Mar, 2017

野崎智義, 守屋繁春, 山本雅裕, 松崎素道, 石田健一郎, 神川龍馬, 小保方潤一, 稲垣祐司, 木原久美子
Investigation on the evolutionary process integrating an endosymbiotic cyanobacterium into the host cellular system

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area), Japan Society for the Promotion of Science, Apr, 2011 - Mar, 2016

INAGAKI Yuji, OBOKATA Junichi, KAMIKAWA Ryoma
Matryoshka-type evolution

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area), Japan Society for the Promotion of Science, Apr, 2011 - Mar, 2016

Nozaki Tomoyoshi, SUZAKI Toshinobu, TSUBOI Takafumi, MORIYA Shigeharu, TSUKUI Kumiko, MATSUZAKI Motomichi, TACHIBANA Hiroshi, ISHIDA Kenichiro, OBOKATA Junichi, HASHIMOTO Tetsuo, KANEKO Osamu, INAGAKI Yuji, INOUE Isao, NAGAI Hiroki, KURODA Makoto, NAGAMUNE Kisaburo
Splicing mechanisms of a novel split intron and evolution of the mRNA maturation process in eukaryotes

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Japan Society for the Promotion of Science, Apr, 2011 - Mar, 2015

HASHIMOTO Tetsuo, INAGAKI Yuji, NARA Takeshi, IIDA Kei
Diversity and evolution of a canonical mitochondrion-lacking protist group, Fornicata

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2011 - Mar, 2014

HASHIMOTO Tetsuo, ISHIDA Kenichiro, INAGAKI Inagaki
Studies on a novel eukaryotic assemblage containing haptophytes and cryptophytes: Possible impact on the Chromalveolata hypothesis.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2009 - 2012

INAGAKI Yuji, ISHIDA Ken-ichiro
Basal construction studies for the diversity of algae-protist complexes

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Japan Society for the Promotion of Science, 2009 - 2012

INOUYE Isao, WATANABE Makoto, HASHIMOTO Tetsuo, ISHIDA Kenichiro, INAGAKI Yuji, NAKAYAMA Takeshi, KIKUCHI Jun, MORIYA Shigeharu
Novel biflagellate TKB055 as a possible early-branch in the global eukaryotic phylogeny : studies on its morphology, transcriptome, and mitochondrial genome

Grants-in-Aid for Scientific Research, Grant-in-Aid for Challenging Exploratory Research, Japan Society for the Promotion of Science, 2010 - 2011

INAGAKI Yuji
Molecular Phylogeny of Fornicata

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, 2008 - 2010

HASHIMOTO Tetsuo, INAGAKI Yuji
Testing the Chromist monophyly based on multi-gene phylogenetic analyses considering the sequence data from katablepharids.

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, 2006 - 2007

INAGAKI Yuji
Early evolution of eukaryotes inferred by combined phylogeny of multiple genes

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, 2005 - 2006

HASHIMOTO Tetsuo, INOUYE Isao, NAKAYAMA Takeshi, INAGAKI Yuji

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