Yuki Matsumoto

Profile Information

Affiliation: 特任研究員（常勤）, 微生物病研究所, 大阪大学

J-GLOBAL ID: 201801008061606245
researchmap Member ID: B000289889

Research Areas

Life sciences / Genomics /

Papers

MGIT-seq for the Identification of Nontuberculous Mycobacteria and Drug Resistance: a Prospective Study.

Kiyoharu Fukushima, Yuki Matsumoto, Takanori Matsuki, Haruko Saito, Daisuke Motooka, Sho Komukai, Eriko Fukui, June Yamuchi, Tadayoshi Nitta, Takayuki Niitsu, Yuko Abe, Hiroshi Nabeshima, Yasuharu Nagahama, Takuro Nii, Kazuyuki Tsujino, Keisuke Miki, Seigo Kitada, Atsushi Kumanogoh, Shizuo Akira, Shota Nakamura, Hiroshi Kida

Journal of clinical microbiology, e0162622, Mar 22, 2023
Clonal dissemination of carbapenem-resistant Klebsiella pneumoniae ST16 co-producing NDM-1 and OXA-232 in Thailand.

Ryuichiro Abe, Yukihiro Akeda, Dan Takeuchi, Noriko Sakamoto, Yo Sugawara, Norihisa Yamamoto, Anusak Kerdsin, Yuki Matsumoto, Daisuke Motooka, Warawut Leolerd, Pitak Santanirand, Masato Suzuki, Keigo Shibayama, Kazunori Tomono, Tetsuya Iida, Shigeyuki Hamada

JAC-antimicrobial resistance, 4(4) dlac084, Aug 1, 2022 Peer-reviewed
Chronic Pulmonary Disease Caused by Tsukamurella toyonakaense.

Tomoki Kuge, Kiyoharu Fukushima, Yuki Matsumoto, Haruko Saito, Yuko Abe, Eri Akiba, Kako Haduki, Tadayoshi Nitta, Akira Kawano, Michio Tanaka, Yumi Hattori, Takahiro Kawasaki, Takanori Matsuki, Takayuki Shiroyama, Daisuke Motooka, Kazuyuki Tsujino, Keisuke Miki, Masahide Mori, Seigo Kitada, Shota Nakamura, Tetsuya Iida, Atsushi Kumanogoh, Hiroshi Kida

Emerging infectious diseases, 28(7) 1437-1441, Jul, 2022
次世代シーケンサーMinIONを用いた抗酸菌リアルタイム同定システムの開発

松本悠希, 福島清春, 元岡大祐, 金城武士, 木田博, 中村昇太

結核, 97(4) 118-118, Jun, 2022
Mycobacterium senriense sp. nov., a slowly growing, non-scotochromogenic species, isolated from sputum of an elderly man.

Yuko Abe, Kiyoharu Fukushima, Yuki Matsumoto, Takayuki Niitsu, Hiroshi Nabeshima, Yasuharu Nagahama, Eri Akiba, Kako Haduki, Haruko Saito, Tadayoshi Nitta, Akira Kawano, Michio Tanaka, Takanori Matsuki, Daisuke Motooka, Kazuyuki Tsujino, Keisuke Miki, Shota Nakamura, Tetsuya Iida, Hiroshi Kida

International journal of systematic and evolutionary microbiology, 72(5), May, 2022
リアルタイムコアゲノム解析による非結核性抗酸菌症の迅速・高精度同定法の確立および臨床応用

新津敬之, 福島清春, 松本悠希, 安部祐子, 新居卓朗, 木庭太郎, 松木隆典, 元岡大祐, 辻野和之, 三木啓資, 中村昇太, 木田博

日本呼吸器学会誌, 11(増刊) 312-312, Apr, 2022
Nationwide surveillance in Thailand revealed genotype-dependent dissemination of carbapenem-resistant Enterobacterales.

Dan Takeuchi, Anusak Kerdsin, Yukihiro Akeda, Yo Sugawara, Noriko Sakamoto, Yuki Matsumoto, Daisuke Motooka, Takuma Ishihara, Isao Nishi, Warawut Laolerd, Pitak Santanirand, Norihisa Yamamoto, Kazunori Tomono, Shigeyuki Hamada

Microbial genomics, 8(4), Apr 1, 2022 Peer-reviewed
Corrigendum: Vescimonas gen. nov., Vescimonas coprocola sp. nov., Vescimonas fastidiosa sp. nov., Pusillimonas gen. nov. and Pusillimonas faecalis sp. nov. isolated from human faeces.

Maki Kitahara, Yuko Shigeno, Mari Shime, Yuki Matsumoto, Shota Nakamura, Daisuke Motooka, Shota Fukuoka, Hiroyoshi Nishikawa, Yoshimi Benno

International journal of systematic and evolutionary microbiology, 72(4), Apr 1, 2022 Peer-reviewed
Analysis of the complete genome sequences of Clostridium perfringens strains harbouring the binary enterotoxin BEC gene and comparative genomics of pCP13-like family plasmids.

Kengo Ueda, Kazuki Kawahara, Narumi Kimoto, Yusuke Yamaguchi, Kazuhiro Yamada, Hiroya Oki, Takuya Yoshida, Shigeaki Matsuda, Yuki Matsumoto, Daisuke Motooka, Kentaro Kawatsu, Tetsuya Iida, Shota Nakamura, Tadayasu Ohkubo, Shinya Yonogi

BMC genomics, 23(1) 226-226, Mar 23, 2022 Peer-reviewed
Whole gut virome analysis of 476 Japanese revealed a link between phage and autoimmune disease.

Yoshihiko Tomofuji, Toshihiro Kishikawa, Yuichi Maeda, Kotaro Ogawa, Takuro Nii, Tatsusada Okuno, Eri Oguro-Igashira, Makoto Kinoshita, Kenichi Yamamoto, Kyuto Sonehara, Mayu Yagita, Akiko Hosokawa, Daisuke Motooka, Yuki Matsumoto, Hidetoshi Matsuoka, Maiko Yoshimura, Shiro Ohshima, Shota Nakamura, Hidenori Inohara, Hideki Mochizuki, Kiyoshi Takeda, Atsushi Kumanogoh, Yukinori Okada

Annals of the rheumatic diseases, 81(2) 278-288, Feb 1, 2022 Peer-reviewed
Metagenome-wide association study revealed disease-specific landscape of the gut microbiome of systemic lupus erythematosus in Japanese.

Yoshihiko Tomofuji, Yuichi Maeda, Eri Oguro-Igashira, Toshihiro Kishikawa, Kenichi Yamamoto, Kyuto Sonehara, Daisuke Motooka, Yuki Matsumoto, Hidetoshi Matsuoka, Maiko Yoshimura, Mayu Yagita, Takuro Nii, Shiro Ohshima, Shota Nakamura, Hidenori Inohara, Kiyoshi Takeda, Atsushi Kumanogoh, Yukinori Okada

Annals of the rheumatic diseases, 80(12) 1575-1583, Dec 1, 2021 Peer-reviewed
Hospital-wide outbreaks of carbapenem-resistant Enterobacteriaceae horizontally spread through a clonal plasmid harbouring blaIMP-1 in children's hospitals in Japan.

Ryuichiro Abe, Fumiya Oyama, Yukihiro Akeda, Masatoshi Nozaki, Takeshi Hatachi, Yuya Okamoto, Hisao Yoshida, Shigeto Hamaguchi, Kazunori Tomono, Yuki Matsumoto, Daisuke Motooka, Tetsuya Iida, Shigeyuki Hamada

The Journal of antimicrobial chemotherapy, 76(12) 3314-3317, Nov 12, 2021 Peer-reviewed
Vescimonas gen. nov., Vescimonas coprocola sp. nov., Vescimonas fastidiosa sp. nov., Pusillimonas gen. nov. and Pusillimonas faecalis sp. nov. isolated from human faeces.

Maki Kitahara, Yuko Shigeno, Mari Shime, Yuki Matsumoto, Shota Nakamura, Daisuke Motooka, Shota Fukuoka, Hiroyoshi Nishikawa, Yoshimi Benno

International journal of systematic and evolutionary microbiology, 71(11), Nov 1, 2021 Peer-reviewed
Pleural Effusion Caused by Mycolicibacterium mageritense in an Immunocompetent Host: A Case Report.

Takayuki Niitsu, Tomoki Kuge, Kiyoharu Fukushima, Yuki Matsumoto, Yuko Abe, Masashi Okamoto, Kako Haduki, Haruko Saito, Tadayoshi Nitta, Akira Kawano, Takanori Matsuki, Daisuke Motooka, Kazuyuki Tsujino, Keisuke Miki, Shota Nakamura, Hiroshi Kida, Atsushi Kumanogoh

Frontiers in medicine, 8 797171-797171, Nov 1, 2021 Peer-reviewed
Serum GPL core antibody levels are associated with disease activity and treatment outcomes in Mycobacterium avium complex lung disease following first line antibiotic treatment

Kiyoharu Fukushima, Seigo Kitada, Yuki Matsumoto, Sho Komukai, Tomoki Kuge, Takahiro Kawasaki, Takanori Matsuki, Daisuke Motooka, Kazuyuki Tsujino, Mari Miki, Keisuke Miki, Shota Nakamura, Hiroshi Kida

Respiratory Medicine, 187 106585-106585, Oct 1, 2021 Peer-reviewed
Enhanced Magnetic Interaction by Face-Shared Hydride Anions in 6H-BaCrO2H.

Kentaro Higashi, Masayuki Ochi, Yusuke Nambu, Takafumi Yamamoto, Taito Murakami, Naoya Yamashina, Cédric Tassel, Yuki Matsumoto, Hiroshi Takatsu, Craig M Brown, Hiroshi Kageyama

Inorganic chemistry, 60(16) 11957-11963, Aug 16, 2021 Peer-reviewed
Enhanced Carbapenem Resistance through Multimerization of Plasmids Carrying Carbapenemase Genes

Ryuichiro Abe, Yukihiro Akeda, Yo Sugawara, Yuki Matsumoto, Daisuke Motooka, Ryuji Kawahara, Norihisa Yamamoto, Kazunori Tomono, Tetsuya Iida, Shigeyuki Hamada

mBio, 12(3) e0018621, Jun 29, 2021 Peer-reviewed
Community spread and acquisition of clinically relevant Escherichia coli harbouring bla<inf>NDM</inf>among healthy Japanese residents of Yangon, Myanmar

Yo Sugawara, Hideharu Hagiya, Yukihiro Akeda, Dan Takeuchi, Noriko Sakamoto, Yuki Matsumoto, Daisuke Motooka, Isao Nishi, Kazunori Tomono, Shigeyuki Hamada

Journal of Antimicrobial Chemotherapy, 76(6) 1448-1454, Jun 1, 2021 Peer-reviewed
Characterization of bla NDM-5-harbouring Klebsiella pneumoniae sequence type 11 international high-risk clones isolated from clinical samples in Yangon General Hospital, a tertiary-care hospital in Myanmar.

Yo Sugawara, Yukihiro Akeda, Hideharu Hagiya, Khwar Nyo Zin, Mya Mya Aye, Dan Takeuchi, Yuki Matsumoto, Daisuke Motooka, Isao Nishi, Kazunori Tomono, Shigeyuki Hamada

Journal of medical microbiology, 70(5), May 1, 2021 Peer-reviewed
次世代シーケンサーを用いた病原性非結核性抗酸菌の多様性の解明

福島清春, 松本悠希, 久下朋輝, 松木隆典, 香川浩之, 元岡大祐, 辻野和之, 三木真理, 三木啓資, 中村昇太, 北田清悟, 木田博

日本呼吸器学会誌, 10(増刊) 219-219, Apr, 2021

Misc.

次世代シーケンサーを用いた病原性非結核性抗酸菌の多様性の解明

福島清春, 松本悠希, 久下朋輝, 松木隆典, 香川浩之, 元岡大祐, 辻野和之, 三木真理, 三木啓資, 中村昇太, 北田清悟, 木田博

日本呼吸器学会誌, 10(増刊) 219-219, Apr, 2021
リアルタイムコアゲノム解析による非結核性抗酸菌症の迅速・高精度同定法の確立および臨床応用

安部祐子, 安部祐子, 福島清春, 福島清春, 福島清春, 松本悠希, 新津敬之, 新津敬之, 新居卓朗, 木庭太郎, 松木隆典, 元岡大祐, 辻野和之, 三木啓資, 中村昇太, 木田博

日本サルコイドーシス/肉芽腫性疾患学会雑誌, 41, 2021
Genomic features of plasmids coding for KPC-2, NDM-5 or OXA-48 carbapenemases in Enterobacteriaceae from Malawi

Geoffrey Peterkins Kumwenda, Yo Sugawara, Yukihiro Akeda, Yuki Matsumoto, Daisuke Motooka, Kazunori Tomono, Shigeyuki Hamada

Journal of Antimicrobial Chemotherapy, 76(1) 267-270, 2021

Presentations

次世代シーケンサーMinIONを用いた抗酸菌リアルタイム同定システムの開発

松本悠希、福島清春、元岡大祐、金城武士、木田博、中村昇太

第97回日本結核・非結核性抗酸菌症学会学術講演会, Jul, 2022

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