Yuji Sugita

J-GLOBAL         Last updated: Dec 24, 2018 at 10:56
 
Avatar
Name
Yuji Sugita
E-mail
sugitariken.jp
Affiliation
RIKEN
Research funding number
80311190
ORCID ID
0000-0001-9738-9216

Research Areas

 
 

Academic & Professional Experience

 
Apr 2012
 - 
Today
Chief Scientist, Theoretical Molecular Science Laboratory, RIKEN
 
Apr 2007
 - 
Mar 2012
Associate Chief Scientist, Theoretical Biochemistry Laboratory, RIKEN
 
Apr 2002
 - 
Mar 2007
Lecturer, Institute of Molecular and Cellular Biosciences, The University of Tokyo
 
Sep 1998
 - 
Mar 2002
Research Associate, Institute for Molecular Science
 
Apr 1998
 - 
Aug 1998
Postdoctoral Fellow, RIKEN
 

Education

 
Apr 1993
 - 
Mar 1998
Department of Chemistry, Graduate School of Science, Kyoto University
 
Apr 1989
 - 
Mar 1993
Faculty of Science, Kyoto University
 

Published Papers

 
Kulik M, Mori T, Sugita Y, Trylska J
Nucleic acids research   46(19) 9960-9970   Sep 2018   [Refereed]
Grzegorz Nawrocki, Alp Karaboga, Yuji Sugita, Michael Feig
Physical Chemistry Chemical Physics      2019   [Refereed]
Pantelopulos George A., Straub John E., Thirumalai D., Sugita Yuji
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES   1860(9) 1698-1708   Sep 2018   [Refereed]
Jaewoon Jung, Chigusa Kobayashi, Yuji Sugita
Journal of Chemical Theory and Computation      Dec 2018   [Refereed]
Kamiya Motoshi, Sugita Yuji
JOURNAL OF CHEMICAL PHYSICS   149(7)    Aug 2018   [Refereed]
Jung Jaewoon, Kobayashi Chigusa, Sugita Yuji
JOURNAL OF CHEMICAL PHYSICS   148(16)    Apr 2018   [Refereed]
Nawrocki Grzegorz, Wang Po-hung, Yu Isseki, Sugita Yuji, Feig Michael
JOURNAL OF PHYSICAL CHEMISTRY B   121(49) 11072-11084   Dec 2017   [Refereed]
Yasuhiro Matsunaga, Yuji Sugita
eLife   7    May 2018   [Refereed]
Kobayashi Chigusa, Jung Jaewoon, Matsunaga Yasuhiro, Mori Takaharu, Ando Tadashi, Tamura Koichi, Kamiya Motoshi, Sugita Yuji
JOURNAL OF COMPUTATIONAL CHEMISTRY   38(25) 2193-2206   Sep 2017   [Refereed]
George A Pantelopulos, John E Straub, Dave Thirumalai, Yuji Sugita
   Feb 2018   [Refereed]
Terasaka Erina, Yamada Kenta, Wang Po-Hung, Hosokawa Kanta, Yamagiwa Raika, Matsumoto Kimi, Ishii Shoko, Mori Takaharu, Yagi Kiyoshi, Sawai Hitomi, Arai Hiroyuki, Sugimoto Hiroshi, Sugita Yuji, Shiro Yoshitsugu, Tosha Takehiko
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   114(37) 9888-9893   Sep 2017   [Refereed]
Re Suyong, Watabe Shigehisa, Nishima Wataru, Muneyuki Eiro, Yamaguchi Yoshiki, MacKerell Alexander D. Jr., Sugita Yuji
SCIENTIFIC REPORTS   8(1)    Jan 2018   [Refereed]
Matsunaga Yasuhiro, Sugita Yuji
ELIFE   7    May 2018   [Refereed]
Feig Michael, Yu Isseki, Wang Po-hung, Nawrocki Grzegorz, Sugita Yuji
JOURNAL OF PHYSICAL CHEMISTRY B   121(34) 8009-8025   Aug 2017   [Refereed]
Thomsen Bo, Kawakami Tomonori, Shigemoto Isamu, Sugita Yuji, Yagi Kiyoshi
JOURNAL OF PHYSICAL CHEMISTRY B   121(24) 6050-6063   Jun 2017   [Refereed]
Jung Jaewoon, Sugita Yuji
JOURNAL OF COMPUTATIONAL CHEMISTRY   38(16) 1410-1418   Jun 2017   [Refereed]
Matsunaga Y, Sugita Y.
Journal of Chemical Physics   148(24)    2018   [Refereed]
Miyashita Osamu, Kobayashi Chigusa, Mori Takaharu, Sugita Yuji, Tama Florence
JOURNAL OF COMPUTATIONAL CHEMISTRY   38(16) 1447-1461   Jun 2017   [Refereed]
Oshima H, Re S, Sakakura M, Takahashi H, Sugita Y.
Biophysical Journal      2018   [Refereed]
Galvelis Raimondas, Sugita Yuji
JOURNAL OF CHEMICAL THEORY AND COMPUTATION   13(6) 2489-2500   Jun 2017   [Refereed]
Yu I, Feig M, Sugita Y.
Journal of Physics: Conference Series   1036(1)    2018   [Refereed]
Furukawa Arata, Yoshikaie Kunihito, Mori Takaharu, Mori Hiroyuki, Morimoto Yusuke V., Sugano Yasunori, Iwaki Shigehiro, Minamino Tohru, Sugita Yuji, Tanaka Yoshiki, Tsukazaki Tomoya
CELL REPORTS   19(5) 895-901   May 2017   [Refereed]
Feig M, Nawrocki G, Yu I, Wang P.-H, Sugita Y.
Journal of Physics: Conference Series   1036(1)    2018   [Refereed]
Galvelis Raimondas, Re Suyong, Sugita Yuji
JOURNAL OF CHEMICAL THEORY AND COMPUTATION   13(5) 1934-1942   May 2017   [Refereed]
Wang Po-hung, Yu Isseki, Feig Michael, Sugita Yuji
CHEMICAL PHYSICS LETTERS   671 63-70   Mar 2017   [Refereed]
Ando Tadashi, Yu Isseki, Feig Michael, Sugita Yuji
JOURNAL OF PHYSICAL CHEMISTRY B   120(46) 11856-11865   Nov 2016   [Refereed]
Yu Isseki, Mori Takaharu, Ando Tadashi, Harada Ryuhei, Jung Jaewoon, Sugita Yuji, Feig Michael
ELIFE   5(NOVEMBER2016)    Nov 2016   [Refereed]
Adhikari Aniruddha, Re Suyong, Nishima Wataru, Ahmed Mohammed, Nihonyanagi Satoshi, Klauda Jeffery B., Sugita Yuji, Tahara Tahei
JOURNAL OF PHYSICAL CHEMISTRY C   120(41) 23692-23697   Oct 2016   [Refereed]
Otaki Hiroki, Yagi Kiyoshi, Ishiuchi Shun-ichi, Fujii Masaaki, Sugita Yuji
JOURNAL OF PHYSICAL CHEMISTRY B   120(39) 10199-10213   Oct 2016   [Refereed]
Jung Jaewoon, Naurse Akira, Kobayashi Chigusa, Sugita Yuji
JOURNAL OF CHEMICAL THEORY AND COMPUTATION   12(10) 4947-4958   Oct 2016   [Refereed]
Shirota Koichiro, Yagi Kiyoshi, Inaba Takehiko, Li Pai-Chi, Murata Michio, Sugita Yuji, Kobayashi Toshihide
BIOPHYSICAL JOURNAL   111(5) 999-1007   Sep 2016   [Refereed]
Mori Takaharu, Miyashita Naoyuki, Im Wonpil, Feig Michael, Sugita Yuji
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES   1858(7) 1635-1651   Jul 2016   [Refereed]
Matsunaga Yasuhiro, Komuro Yasuaki, Kobayashi Chigusa, Jung Jaewoon, Mori Takaharu, Sugita Yuji
JOURNAL OF PHYSICAL CHEMISTRY LETTERS   7(8) 1446-1451   Apr 2016   [Refereed]
Nishima Wataru, Mizukami Wataru, Tanaka Yoshiki, Ishitani Ryuichiro, Nureki Osamu, Sugita Yuji
BIOPHYSICAL JOURNAL   110(6) 1346-1354   Mar 2016   [Refereed]
Jung Jaewoon, Kobayashi Chigusa, Imamura Toshiyuki, Sugita Yuji
COMPUTER PHYSICS COMMUNICATIONS   200 57-65   Mar 2016   [Refereed]
Matsuoka Rei, Shimada Atsushi, Komuro Yasuaki, Sugita Yuji, Kohda Daisuke
PROTEIN SCIENCE   25(3) 754-768   Mar 2016   [Refereed]
Patel Dhilon S., Re Suyong, Wu Emilia L., Qi Yifei, Klebba Phillip E., Widmalm Goeran, Yeom Min Sun, Sugita Yuji, Im Wonpil
BIOPHYSICAL JOURNAL   110(4) 930-938   Feb 2016   [Refereed]
Tanaka Yoshiki, Sugano Yasunori, Takemoto Mizuki, Mori Takaharu, Furukawa Arata, Kusakizako Tsukasa, Kumazaki Kaoru, Kashima Ayako, Ishitani Ryuichiro, Sugita Yuji, Nureki Osamu, Tsukazaki Tomoya
CELL REPORTS   13(8) 1561-1568   Nov 2015   [Refereed]
Kobayashi Chigusa, Matsunaga Yasuhiro, Koike Ryotaro, Ota Motonori, Sugita Yuji
JOURNAL OF PHYSICAL CHEMISTRY B   119(46) 14584-14593   Nov 2015   [Refereed]
Galvelis Raimondas, Sugita Yuji
JOURNAL OF COMPUTATIONAL CHEMISTRY   36(19) 1446-1455   Jul 2015   [Refereed]
Jung Jaewoon, Mori Takaharu, Kobayashi Chigusa, Matsunaga Yasuhiro, Yoda Takao, Feig Michael, Sugita Yuji
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE   5(4) 310-323   Jul 2015   [Refereed]
Matsunaga Yasuhiro, Kidera Akinori, Sugita Yuji
JOURNAL OF CHEMICAL PHYSICS   142(21)    Jun 2015   [Refereed]
Feig Michael, Harada Ryuhei, Mori Takaharu, Yu Isseki, Takahashi Koichi, Sugita Yuji
JOURNAL OF MOLECULAR GRAPHICS & MODELLING   58 1-9   May 2015   [Refereed]
Kobayashi Chigusa, Koike Ryotaro, Ota Motonori, Sugita Yuji
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS   83(4) 746-756   Apr 2015   [Refereed]
Miyashita Naoyuki, Re Suyong, Sugita Yuji
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY   115(5) 325-332   Mar 2015   [Refereed]
Re Suyong, Nishima Wataru, Tahara Tahei, Sugita Yuji
JOURNAL OF PHYSICAL CHEMISTRY LETTERS   6(1) 195   Jan 2015   [Refereed]
Yagi Kiyoshi, Li Pai-Chi, Shirota Koichiro, Kobayashi Toshihide, Sugita Yuji
PHYSICAL CHEMISTRY CHEMICAL PHYSICS   17(43) 29113-29123   2015   [Refereed]
Re Suyong, Nishima Wataru, Tahara Tahei, Sugita Yuji
JOURNAL OF PHYSICAL CHEMISTRY LETTERS   5(24) 4343-4348   Dec 2014   [Refereed]
Komuro Yasuaki, Re Suyong, Kobayashi Chigusa, Muneyuki Eiro, Sugita Yuji
JOURNAL OF CHEMICAL THEORY AND COMPUTATION   10(9) 4133-4142   Sep 2014   [Refereed]