Yutaka Nibu - My portal

Profile Information

Affiliation: Designated Associate Professor, Institute for Glyco-core Research (iGCORE), Tokai National Higher Education and Research System, Nagoya University

Degree: Ph.D.(1995, University of Tsukuba)
Master of Environmental Sciences in Biochemistry(1992, University of Tsukuba)

ORCID ID: https://orcid.org/0000-0002-4696-7503
J-GLOBAL ID: 202101005637317593
researchmap Member ID: R000022474

Research History

May, 2023 - Present

特任准教授・副室長（研究マネジメント職）, 糖鎖生命コア研究所（iGCORE）戦略推進室, 東海国立大学機構名古屋大学
May, 2022 - Present

Designated Associate Professor, Institute for Glyco-core Research (iGCORE), Tokai National Higher Education and Research System, Nagoya University
2018 - Apr, 2022

Senior Assistant Professor, Research Administrator, University Research Administration Center, Tokyo University of Agriculture and Technology
2015

Research Administrator, Research Administration/Management Office, University of Tsukuba
2002

Assistant Professor, Department of Cell and Developmental Biology,, Weill Cornell Medicine,
1998 - 2000

JSPS Postdoctoral Fellowships for Research Abroad
1997

Postdoctoral Fellow, Associate Specialist, Department of Molecular and Cell Biology,, University of California at Berkeley,
1995

Research Associate, Institute of Applied Biochemistry, University of Tsukuba

Education

Awards

Aug, 2023

Poster Presentation Award, evements of the Research University - Past and Future –, the 9th RMAN-J Annual Conference

Eriko Sano, Hiroyuki Ito, Yutaka Nibu
2010

Marquis Who's Who in America, 64th Edition

Papers

Natto extract inhibits infection caused by the Aujeszky's disease virus in mice

Kobayashi, J., Wen, R., Nishikawa, T., Nunomura, Y., Suzuki, T., Sejima, Y., Gokan, T., Furukawa, M., Yokota, T., Osawa, N. …

Microbiology and Immunology, 2023 Peer-reviewed
Natto extract, a Japanese fermented soybean food, directly inhibits viral infections including SARS-CoV-2 in vitro

Mami Oba, Wen Rongduo, Akatsuki Saito, Tamaki Okabayashi, Tomoko Yokota, Junko Yasuoka, Yoko Sato, Koji Nishifuji, Hitoshi Wake, Yutaka Nibu …

Biochemical and Biophysical Research Communications, 570 21-25, Sep, 2021 Peer-reviewed
The Nutrient-Responsive Hormone CCHamide-2 Controls Growth by Regulating Insulin-like Peptides in the Brain of Drosophila melanogaster

Sano, H., Nakamura, A., Texada, M.J., Truman, J.W., Ishimoto, H., Kamikouchi, A., Nibu, Y., Kume, K., Ida, T., Kojima, M.

PLoS Genetics, 11(5), 2015 Peer-reviewed
Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord

José-Edwards, D.S., Oda-Ishii, I., Kugler, J.E., Passamaneck, Y.J., Katikala, L., Nibu, Y., Di Gregorio, A.

PLoS Genetics, 11(12), 2015 Peer-reviewed
Functional Brachyury Binding Sites Establish a Temporal Read-out of Gene Expression in the Ciona Notochord

Katikala, L., Aihara, H., Passamaneck, Y.J., Gazdoiu, S., José-Edwards, D.S., Kugler, J.E., Oda-Ishii, I., Imai, J.H., Nibu, Y., Di Gregorio, A.

PLoS Biology, 11(10) e1001697, 2013 Peer-reviewedLast authorCorresponding author
Optimization of a Method for Chromatin Immunoprecipitation Assays in the Marine Invertebrate Chordate Ciona

Aihara, H., Katikala, L., Zeller, R.W., Di Gregorio, A., Nibu, Y.

Marine Biotechnology, 15(5) 520-525, 2013 Peer-reviewedLast authorCorresponding author
From notochord formation to hereditary chordoma: The many roles of brachyury

Nibu, Y., Jos{\'e}-Edwards, D.S., Di Gregorio, A.

BioMed Research International, 2013 1-14, 2013 Peer-reviewedLead authorCorresponding author
Akirin links twist-regulated transcription with the brahma chromatin remodeling complex during embryogenesis

Nowak, S.J., Aihara, H., Gonzalez, K., Nibu, Y., Baylies, M.K.

PLoS Genetics, 8(3) e1002547, 2012 Peer-reviewed
Tbx2/3 is an essential mediator within the brachyury gene network during Ciona notochord development

Jos{\'e}-Edwards, D.S., Oda-Ishii, I., Nibu, Y., Di Gregorio, A.

Development (Cambridge), 140(11), 2012 Peer-reviewedLast authorCorresponding author
CtBP is required for proper development of peripheral nervous system in Drosophila

Stern, M.D., Aihara, H., Roccaro, G.A., Cheung, L., Zhang, H., Negeri, D., Nibu, Y.

Mechanisms of Development, 126(1-2), 2009 Peer-reviewedLast authorCorresponding author
Drosophila Ebi mediates Snail-dependent transcriptional repression through HDAC3-induced histone deacetylation

Qi, D., Bergman, M., Aihara, H., Nibu, Y., Mannervik, M.

EMBO Journal, 27(6), 2008 Peer-reviewed
The acetyltransferase activity of Drosophila CBP is dispensable for regulation of the Dpp pathway in the early embryo

Lilja, T., Aihara, H., Stabell, M., Nibu, Y., Mannervik, M.

Developmental Biology, 305(2), 2007 Peer-reviewed
Structurally related Arabidopsis ANGUSTIFOLIA is functionally distinct from the transcriptional corepressor CtBP

Stern, M.D., Aihara, H., Cho, K.-H., Kim, G.-T., Horiguchi, G., Roccaro, G.A., Guevara, E., Sun, H.H., Negeri, D., Tsukaya, H. …

Development Genes and Evolution, 217(11-12), 2007 Peer-reviewedLast authorCorresponding author
Finb, a multiple zinc finger protein, represses transcription of the human angiotensinogen gene.

Date, S., Nibu, Y., Yanai, K., Hirata, J., Yagami, K., Fukamizu, A.

International journal of molecular medicine, 13(5), 2004 Peer-reviewed
CtBP-independent repression in the Drosophila embryo

Nibu, Y., Senger, K., Levine, M.

Molecular and Cellular Biology, 23(11), 2003 Peer-reviewedLead author
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

Berman, B.P., Nibu, Y., Pfeiffer, B.D., Tomancak, P., Celniker, S.E., Levine, M., Rubin, G.M., Eisen, M.B.

Proceedings of the National Academy of Sciences of the United States of America, 99(2) 757-757, 2002 Peer-reviewed
CtBP-dependent activities of the short-range giant repressor in the Drosophila embryo

Nibu, Y., Levine, M.S.

Proceedings of the National Academy of Sciences of the United States of America, 98(11), 2001 Peer-reviewedLead author
Local action of long-range repressors in the Drosophila embryo

Nibu, Y., Zhang, H., Levine, M.

EMBO Journal, 20(9), 2001 Peer-reviewedLead author
Transcriptional coregulators in development

Mannervik, M., Nibu, Y., Zhang, H., Levine, M.

Science, 284(5414) 606-609, 1999 Peer-reviewed
Regulated expression of human angiotensinogen gene by hepatocyte nuclear factor 4 and chicken ovalbumin upstream promoter-transcription factor

Yanai, K., Hirota, K., Taniguchi-Yanai, K., Shigematsu, Y., Shimamoto, Y., Saito, T., Chowdhury, S., Takiguchi, M., Arakawa, M., Nibu, Y. …

Journal of Biological Chemistry, 274(49), 1999 Peer-reviewed

Misc.

Regulated expression of human angiotensinogen gene by HNF4 and COUP-TF

K Hirota, K Yanai, K Taniguchi-Yanai, Y Shigematsu, Y Shimamoto, T Saito, M Arakawa, Y Nibu, A Fukamizu

JOURNAL OF HYPERTENSION, 18 S183-S183, 2000
Functional characterization of the Factor Binding to the 3'Downstream Enhan cer Core Element of human Angiotensinogen Gene

DATE S., YANAI K., NIBU Y., MURAKAMI K., FUKAMIZU A.

21 397-397, Dec 1, 1998

Books and Other Publications

東京農工大学におけるSDGs関連研究の事例と社会貢献への支援 pp451-464, 書籍の題：SDGsの経営･事業戦略への導入と研究開発テーマの発掘、進め方

二歩裕, 水谷哲也 (Role: Joint author)

技術情報協会, Jan, 2022
「東京農工大学の研究活動とその社会貢献」木材工業 76, 402-405, 2021年

二歩裕

木材工業, Oct, 2021
「俯瞰ワークショップ報告書社会および産業競争力を支える基盤としての環境リスク評価研究」CRDS-FY2019-WR-05（分担執筆）

国立研究開発法人科学技術振興機構, 2020
「戦略プロポーザル環境調和型プラスチック戦略〜化学物質としてのプラスチックの安全な管理・活用を推進するための戦略的研究〜」CRDS-FY2019-SP-07（分担執筆）

国立研究開発法人科学技術振興機構, 2020
「東京農工大学における共同研究推進の取り組み」pp203-210. 書籍の題：「共同研究開発の進め方と契約のポイント」

二歩裕, 伊藤伸

技術情報協会出版, 2020
Transcriptional repression by the CtBP corepressor in Drosophila. In: CtBP Family Proteins (ed. D. Chinnadurai), Chapter 2, p18-27

Aihara H, Perrone L, Nibu Y

Landes Bioscience, 2007
Transcriptional repressors and repression mechanisms. In: Gene Expression and Regulation (ed. J. Ma), Chapter 09, p159-173

Perrone L, Aihara H, Nibu Y

Current Scientific Frontiers Book, Higher Education Press, 2006
New aspect of the renin-angiotensin system: focus on regulation of human angiotensinogen gene. Blood Vessel and Endothelium 6(5), 478-486 (1996), in Japanese

Nibu Y, Fukamizu A

1996

Presentations

Achievements of the Research University

Eriko Sano, Hiroyuki Ito, Yutaka Nibu

the 9th RMAN-J Annual Conference, Aug 9, 2023
研究マネジメント人材の獲得戦略〜ニーズに呼応したトランスフォーメーション〜

伊藤広幸, 佐野恵利子, 二歩裕

研究・イノベーション学会第37年次学術大会, Oct 30, 2022
URAの業務拡大と求められる専門性の変化(II)

佐野恵利子, 伊藤広幸, 二歩裕

RA協議会第8回年次大会, Aug 30, 2022
東京農工大学におけるチーム型研究の推進とベンチャー創出・育成の取組

齋藤憲一郎, 二歩裕, 前畑英雄

RA協議会第7回年次大会, Sep 14, 2021
民間企業からの投資のゆくえ -産学連携の伸びしろの可能性-

佐野恵利子, 伊藤広幸, 二歩裕

RA協議会第7回年次大会, Sep 14, 2021
Strategy from building of interdisciplinary research to global collaborations at Tokyo University of Agriculture and Technology.

Nibu Y, Saito K

INORMS 2021 (The International Network of Research Management Societies ), 2021
URAの業務拡大と求められる専門性の変化

佐野恵利子, 伊藤広幸, 二歩裕

RA協議会第6回年次大会, 2020
次世代の研究力マップ -博士人材育成を起源とする研究力指標-

伊藤広幸, 佐野恵利子, 二歩裕

RA協議会第5回年次大会, 2019
主要国における分野別論文数の動向 -2つの書誌データベースの特⻑を知り、活かして、上手に活用するには-」

二歩裕, 伊藤広幸, 佐野恵利子

RA協議会第4回年次大会, 2018
筑波大学の国際産学連携の方針と部局から生まれた社会での応用事例

二歩裕

日本台湾産学連携推進セミナー（台北駐日経済文化代表処）, 2016 Invited
A new strategy to facilitate academia-industry research collaboration and research expense hunting using disclosed information at University of Tsukuba.

Sazawa H, Akutsu Y, Komatsubara S, Nukaga M, Ito M, Nibu Y, Baba T

INORMS 2016 (The International Network of Research Management Societies), 2016

Professional Memberships

Feb, 2023 - Present

産学連携学会
Aug, 2022 - Present

Japan Society for Research Policy and Innovation Management
2015 - Present

Research Manager and Administrator Network Japan
2002 - 2013

The Genetics Society of America
2002 - 2013

The Society for Developmental Biology
1998 - 2004

American Association for the Advancement of Science
1992 - 2002

日本分子生物学会
1992 - 1997

日本生化学会
1989 - 1992

日本農芸化学会

Academic Activities

RA協議会ジャーナル編集委員

Planning, management, etc., Peer review

Apr, 2023 - Present
RA協議会国際専門委員会委員

Planning, management, etc.

Nov, 2022 - Present
資料提供第一学習社「高等学校生物」と「スクエア最新図説生物」

Other

2022
研究大学コンソーシアム「国際情報発信に関するタスクフォース」委員

Planning, management, etc.

2018 - 2021
RA協議会第6回年次大会実行委員/セッション担当

Planning, management, etc.

2020
資料提供第一学習社「高等学校生物」と「スクエア最新図説生物」

Other

2013
Gene ControlのChapter 8: Gene Control and Cellular Signalling Pathways（第8章「遺伝子調節とシグナル伝達経路」）日本語訳

Other

2012

Social Activities

講義ニューヨーク市立小学校（PS78）

Lecturer

2012