論文

査読有り 筆頭著者 国際誌
2021年8月11日

Effects of Weak Nonspecific Interactions with ATP on Proteins.

Journal of the American Chemical Society
  • Mayu Nishizawa
  • ,
  • Erik Walinda
  • ,
  • Daichi Morimoto
  • ,
  • Benjamin Kohn
  • ,
  • Ulrich Scheler
  • ,
  • Masahiro Shirakawa
  • ,
  • Kenji Sugase

143
31
開始ページ
11982
終了ページ
11993
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1021/jacs.0c13118

Adenosine triphosphate (ATP) is an immensely well-studied metabolite serving multiple key biochemical roles as the major chemical energy currency in living systems, a building block of ribonucleic acids, and a phosphoryl group donor in kinase-mediated signaling. Intriguingly, ATP has been recently proposed to act as a hydrotrope that inhibits aggregation of amyloidogenic proteins; however, the underlying mechanism and the general physicochemical effect that coexistence with ATP exerts on proteins remain unclear. By combining NMR spectroscopy and MD simulations, here we observed weak but unambiguously measurable and concentration-dependent noncovalent interactions between ATP and various proteins. The interactions were most pronounced for an intrinsically disordered protein (α-synuclein) and for residues in flexible regions (e.g., loops or termini) of two representative folded proteins (ubiquitin and the dimeric ubiquitin-binding domain of p62). As shown by solution NMR, a consequence of the ATP-protein interaction was altered hydration of solvent-exposed residues in the protein. The observation that ATP interacted with all three proteins suggests that ATP is a general nonspecific binder of proteins. Several complementary biophysical methods further confirmed that, at physiological concentrations of ∼5-10 mM, ATP starts to form oligomeric states via magnesium-chelating and chelation-independent mechanisms, in agreement with previous studies. Although the observed ATP-protein interaction was relatively weak overall, the high ratio of ATP (monomeric free ATP, mono- and divalent ion-bound ATP, oligomeric and chelated ATP) to proteins in cells suggests that most proteins are likely to encounter transient interactions with ATP (and chemically similar metabolites) that confer metabolite-mediated protein surface protection.

リンク情報
DOI
https://doi.org/10.1021/jacs.0c13118
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/34338526
ID情報
  • DOI : 10.1021/jacs.0c13118
  • PubMed ID : 34338526

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