The posterior shell edge (PSE) of wild mytilid mussels that are highly infected with unicellular photosynthetic green algae Coccomyxa sp. exhibits an extra shell material (ESM). A recently proposed mechanism of ESM formation shows similarity with light-enhanced calcification (LEC), i.e., algae photosynthesis mediates low respiratory CO2 level in shell calcification site (PSE) to promote ESM precipitation. The present study evaluates if infection with algae may affect the δ13C content and metabolic carbon (CM) contribution to shells (PSE) in mussels from the Lower St. Lawrence Estuary, Québec, Canada. Environmental conditions may influence shell δ13C records. To underline possible algae photosynthesis effects, mantle, adductor muscle and shell δ13C are analyzed in infected and non-infected mussels collected from two sites with different salinities, seawater dissolved inorganic carbon (DIC) content, and hydrodynamic regimes. Shell δ13C and tissue δ13C correlate with seawater DIC and salinity. Shell δ13C values are lowest in non-infected mussels, whereas tissues δ13C values show the opposite relationship; in both cases, differences between δ13C values in non-infected and infected mussels are about 0.5‰. The percentage of CM incorporated into shell is higher (ca. 18%) for non-infected mussels than infected mussels (ca. 15%). Literature on the subject suggests that increased δ13C content and decreased %CM in shells of infected mussels must be related to algal photosynthetic activity. Our findings show that shell δ13C records permit the interpretation of ESM formation via LEC.