論文

査読有り
2017年5月

The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine

NUCLEIC ACIDS RESEARCH
  • Jakub Sebera
  • ,
  • Yoshikazu Hattori
  • ,
  • Daichi Sato
  • ,
  • David Reha
  • ,
  • Radim Nencka
  • ,
  • Takashi Kohno
  • ,
  • Chojiro Kojima
  • ,
  • Yoshiyuki Tanaka
  • ,
  • Vladimir Sychrovsky

45
9
開始ページ
5231
終了ページ
5242
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1093/nar/gkx157
出版者・発行元
OXFORD UNIV PRESS

The excision of 8-oxoguanine (oxoG) by the human 8-oxoguanine DNA glycosylase 1 (hOGG1) base-excision repair enzyme was studied by using the QM/MM (M06-2X/6-31G(d,p): OPLS2005) calculation method and nuclear magnetic resonance (NMR) spectroscopy. The calculated glycosylase reaction included excision of the oxoG base, formation of Lys249-ribose enzyme-substrate covalent adduct and formation of a Schiff base. The formation of a Schiff base with Delta G(#) = 17.7 kcal/mol was the rate-limiting step of the reaction. The excision of the oxoG base with Delta G(#) = 16.1 kcal/mol proceeded via substitution of the C1'-N9 N-glycosidic bond with an H-N9 bond where the negative charge on the oxoG base and the positive charge on the ribose were compensated in a concerted manner by NH3+(Lys249) and CO2- (Asp268), respectively. The effect of Asp268 on the oxoG excision was demonstrated with H-1 NMR for WT hOGG1 and the hOGG1(D268N) mutant: the excision of oxoG was notably suppressed when Asp268 was mutated to Asn. The loss of the base-excision function was rationalized with QM/MM calculations and Asp268 was confirmed as the electrostatic stabilizer of ribose oxocarbenium through the initial base-excision step of DNA repair. The NMR experiments and QM/MM calculations consistently illustrated the base-excision reaction operated by hOGG1.

リンク情報
DOI
https://doi.org/10.1093/nar/gkx157
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/28334993
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000402064200028&DestApp=WOS_CPL
ID情報
  • DOI : 10.1093/nar/gkx157
  • ISSN : 0305-1048
  • eISSN : 1362-4962
  • PubMed ID : 28334993
  • Web of Science ID : WOS:000402064200028

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