2016年
DASE: condition-specific Differential Alternative Splicing variants Estimation method without reference genome sequence, and its application to non-model organisms
2016 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM)
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- 開始ページ
- 324
- 終了ページ
- 329
- 記述言語
- 英語
- 掲載種別
- 出版者・発行元
- IEEE COMPUTER SOC
Alternative splicing is a mechanism to produce gene expression diversity under the constraint of a limited number of genes, causing spatiotemporal gene expression in many tissues and developmental processes in organisms. This mechanism is well studied in model organisms but not in non-model organisms because the current standard method requires genomic sequences as well as fully annotated information of exons and introns, that are not accessible from non-model organisms. However, it is essential to uncover the landscape of alternative splicing of organisms to understand its evolutionary impacts and roles. We developed a method for condition-specific alternative splicing estimation based on de novo transcriptome assembly, and it would help to enlarge knowledge of alternative splicing functionalized in non-model organisms. The software is deposited to https://github.com/koukiyonezawa/DASE.
- リンク情報
- ID情報
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- ISSN : 2156-1125
- Web of Science ID : WOS:000393191700055