論文

国際誌
2023年5月11日

Convergent evolution of SARS-CoV-2 Omicron subvariants leading to the emergence of BQ.1.1 variant.

Nature communications
  • Jumpei Ito
  • Rigel Suzuki
  • Keiya Uriu
  • Yukari Itakura
  • Jiri Zahradnik
  • Kanako Terakado Kimura
  • Sayaka Deguchi
  • Lei Wang
  • Spyros Lytras
  • Tomokazu Tamura
  • Izumi Kida
  • Hesham Nasser
  • Maya Shofa
  • Mst Monira Begum
  • Masumi Tsuda
  • Yoshitaka Oda
  • Tateki Suzuki
  • Jiei Sasaki
  • Kaori Sasaki-Tabata
  • Shigeru Fujita
  • Kumiko Yoshimatsu
  • Hayato Ito
  • Naganori Nao
  • Hiroyuki Asakura
  • Mami Nagashima
  • Kenji Sadamasu
  • Kazuhisa Yoshimura
  • Yuki Yamamoto
  • Tetsuharu Nagamoto
  • Jin Kuramochi
  • Gideon Schreiber
  • Akatsuki Saito
  • Keita Matsuno
  • Kazuo Takayama
  • Takao Hashiguchi
  • Shinya Tanaka
  • Takasuke Fukuhara
  • Terumasa Ikeda
  • Kei Sato
  • 全て表示

14
1
開始ページ
2671
終了ページ
2671
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1038/s41467-023-38188-z

In late 2022, various Omicron subvariants emerged and cocirculated worldwide. These variants convergently acquired amino acid substitutions at critical residues in the spike protein, including residues R346, K444, L452, N460, and F486. Here, we characterize the convergent evolution of Omicron subvariants and the properties of one recent lineage of concern, BQ.1.1. Our phylogenetic analysis suggests that these five substitutions are recurrently acquired, particularly in younger Omicron lineages. Epidemic dynamics modelling suggests that the five substitutions increase viral fitness, and a large proportion of the fitness variation within Omicron lineages can be explained by these substitutions. Compared to BA.5, BQ.1.1 evades breakthrough BA.2 and BA.5 infection sera more efficiently, as demonstrated by neutralization assays. The pathogenicity of BQ.1.1 in hamsters is lower than that of BA.5. Our multiscale investigations illuminate the evolutionary rules governing the convergent evolution for known Omicron lineages as of 2022.

リンク情報
DOI
https://doi.org/10.1038/s41467-023-38188-z
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/37169744
PubMed Central
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10175283
ID情報
  • DOI : 10.1038/s41467-023-38188-z
  • PubMed ID : 37169744
  • PubMed Central 記事ID : PMC10175283

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