論文

査読有り
2014年2月

Quantitative Analysis of Location- and Sequence-Dependent Deamination by APOBEC3G Using Real-Time NMR Spectroscopy

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
  • Ayako Furukawa
  • ,
  • Kenji Sugase
  • ,
  • Ryo Morishita
  • ,
  • Takashi Nagata
  • ,
  • Tsutomu Kodaki
  • ,
  • Akifumi Takaori-Kondo
  • ,
  • Akihide Ryo
  • ,
  • Masato Katahira

53
9
開始ページ
2349
終了ページ
2352
記述言語
英語
掲載種別
研究論文(学術雑誌)
DOI
10.1002/anie.201309940
出版者・発行元
WILEY-V C H VERLAG GMBH

The human antiretroviral factor APOBEC3G (A3G) deaminates the newly synthesized minus strand of the human immunodeficiency virus 1 (HIV-1), which results in the abolition of the infectivity of virus-infectivity-factor (Vif)-deficient HIV-1 strains.([1-6]) A unique property of A3G is that it deaminates a CCC hot spot that is located close to the 5' end more effectively than one that is less close to the 5' end. However, the mechanism of this process is elusive as it includes nonspecific binding of A3G to DNA and sliding of A3G along the DNA strand. Therefore, this process cannot be analyzed by existing methods using the Michaelis-Menten theory. A new real-time NMR method has been developed to examine the nonspecific binding and the sliding processes explicitly, and it was applied to the analysis of the deamination by A3G. As a result, the location-dependent deamination can be explained by a difference in the catalytic rates that depend on the direction of the approach of A3G to the target cytidine. Real-time NMR experiments also showed that A3G deaminates CCCC tandem hotspots with little redundancy, which suggests that A3G efficiently mutates many CCC hotspots that are scattered throughout the HIV-1 genome.

リンク情報
DOI
https://doi.org/10.1002/anie.201309940
PubMed
https://www.ncbi.nlm.nih.gov/pubmed/24478136
Web of Science
https://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=JSTA_CEL&SrcApp=J_Gate_JST&DestLinkType=FullRecord&KeyUT=WOS:000336834000005&DestApp=WOS_CPL
ID情報
  • DOI : 10.1002/anie.201309940
  • ISSN : 1433-7851
  • eISSN : 1521-3773
  • PubMed ID : 24478136
  • Web of Science ID : WOS:000336834000005

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