Hiroyuki Ogata

Profile Information

Affiliation: Institute for Chemical Research, Kyoto University

Degree: 博士(理学）(京都大学)

Researcher number: 70291432
J-GLOBAL ID: 201301080969730019
researchmap Member ID: B000231746

External link: https://cls.kuicr.kyoto-u.ac.jp/

Research Areas

Life sciences / Marine/Aquatic life sciences /

Papers

202

DiGAlign: Versatile and Interactive Visualization of Sequence Alignment for Comparative Genomics

Yosuke Nishimura, Kohei Yamada, Yusuke Okazaki, Hiroyuki Ogata

Microbes and Environments, 39(1) n/a-n/a, 2024
A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis

Hongda Zhao, Ruixuan Zhang, Junyi Wu, Lingjie Meng, Yusuke Okazaki, Hiroyuki Hikida, Hiroyuki Ogata

Virus Evolution, 9(2), Oct 31, 2023 Peer-reviewedLast authorCorresponding author
Genomic adaptation of giant viruses in polar oceans

Meng L, Delmont T.O, Gaïa M, Pelletier E, Fernandez-Guerra A, Chaffron S, Neches R.Y, Wu J, Kaneko H, Endo H …

Nature Communications, 14(6233), Oct 12, 2023 Peer-reviewedLast authorCorresponding author
Predicting global distributions of eukaryotic plankton communities from satellite data

Hiroto Kaneko, Hisashi Endo, Nicolas Henry, Cédric Berney, Frédéric Mahé, Julie Poulain, Karine Labadie, Odette Beluche, Roy El Hourany, Silvia G. Acinas …

ISME Communications, 3(1), Sep 22, 2023 Peer-reviewedLast authorCorresponding author
A rapid genome-wide analysis of isolated giant viruses using MinION sequencing.

Hiroyuki Hikida, Yusuke Okazaki, Ruixuan Zhang, Thi Tuyen Nguyen, Hiroyuki Ogata

Environmental microbiology, 25(11) 2621-2635, Aug 5, 2023 Peer-reviewedLast author
Genome analysis of Parmales, a sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs

Hiroki Ban, Shinya Sato, Shinya Yoshikawa, Kazumasa Yamada, Yoji Nakamura, Mutsuo Ichinomiya, Naoki Sato, Romain Blanc-Mathieu, Hisashi Endo, Akira Kuwata …

COMMUNICATIONS BIOLOGY, 6(697), Jul 7, 2023 Peer-reviewedLast authorCorresponding author
Mirusviruses link herpesviruses to giant viruses

Gaïa M, Meng L, Pelletier E, Forterre P, Vanni C, Fernandez-Guerra A, Jaillon O, Wincker P, Ogata H, Krupovic M …

Nature, 616 783-789, Apr, 2023 Peer-reviewed
“Mamonoviridae”, a proposed new family of the phylum Nucleocytoviricota

Zhang, Ruixuan, Takemura, Masaharu, Murata, Kazuyoshi, Ogata, Hiroyuki

Archives of Virology, 168(3), Feb 5, 2023 Peer-reviewedLast author
Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis.

Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida

mSystems, 8(1) e0093122, Feb 1, 2023 Peer-reviewed
Ocean-wide comparisons of mesopelagic planktonic community structures.

Rigonato J, Budinich M, Murillo A.A, Brandao M.C, Pierella Karlusich J.J, Soviadan Y.D, Gregory A.C, Endo H, Kokoszka F, Vik D …

ISME Communications, 2023 Peer-reviewed
Create a new family (“Mamonoviridae”), a genus (“Medusavirus”), and two species (“Medusavirus medusae” and “Medusavirus sthenus”) in the phylum Nucleocytoviricota.

Zhang R, Takemura M, Murata K, Ogata H

ICTV Taxonomic Proposal, 2023 Peer-reviewedLast author
A Fast and Easy Method to Co-extract DNA and RNA from an Environmental Microbial Sample

Yusuke Okazaki, Tuyen Thi Nguyen, Arisa Nishihara, Hisashi Endo, Hiroyuki Ogata, Shin-ichi Nakano, Hideyuki Tamaki

Microbes and Environments, 38(1) n/a-n/a, 2023 Peer-reviewed
MSNet-4mC: Learning effective multi-scale representations for identifying DNA N4-methylcytosine sites

Chunting Liu, Jiangning Song, Hiroyuki Ogata, Tatsuya Akutsu

Bioinformatics, 38(23) 5160-5167, Oct 7, 2022 Peer-reviewed
Global observation of plankton communities from space

Hiroto Kaneko, Hisashi Endo, Nicolas Henry, Cédric Berney, Frédéric Mahé, Julie Poulain, Karine Labadie, odette beluche, Roy El Hourany, Samuel Chaffron …

Sep 26, 2022
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel J. Richter, Romain Watteaux, Thomas Vannier, Jade Leconte, Paul Frémont, Gabriel Reygondeau, Nicolas Maillet, Nicolas Henry, Gaëtan Benoit, Ophélie Da Silva …

Aug 3, 2022 Peer-reviewed
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes

Caroline Vernette, Julien Lecubin, Pablo Sánchez, Silvia G Acinas, Marcel Babin, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane, Colomban de Vargas …

Nucleic Acids Research, 50(W1) W516-W526, Jul 5, 2022 Peer-reviewed
Diversity and ecological footprint of Global Ocean RNA viruses

Guillermo Dominguez-Huerta, Ahmed A. Zayed, James M. Wainaina, Jiarong Guo, Funing Tian, Akbar Adjie Pratama, Benjamin Bolduc, Mohamed Mohssen, Olivier Zablocki, Eric Pelletier …

Science, 376(6598) 1202-1208, Jun 10, 2022 Peer-reviewed
Tight association between microbial eukaryote and giant virus communities in the Arctic Ocean

Jun Xia, Sohiko Kameyama, Florian Prodinger, Takashi Yoshida, Kyoung‐Ho Cho, Jinyoung Jung, Sung‐Ho Kang, Eun‐Jin Yang, Hiroyuki Ogata, Hisashi Endo

Limnology and Oceanography, 67(6) 1343-1356, Jun, 2022 Peer-reviewed
Functional Differentiation among the Arabidopsis Phosphatidylinositol 4-Phosphate 5-Kinase Genes PIP5K1, PIP5K2 and PIP5K3

Machiko Watari, Mariko Kato, Romain Blanc-Mathieu, Tomohiko Tsuge, Hiroyuki Ogata, Takashi Aoyama

Plant and Cell Physiology, 63(5) 635-648, May 16, 2022 Peer-reviewed
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom O. Delmont, Morgan Gaia, Damien D. Hinsinger, Paul Frémont, Chiara Vanni, Antonio Fernandez-Guerra, A. Murat Eren, Artem Kourlaiev, Leo d'Agata, Quentin Clayssen …

Cell Genomics, 2(5) 100123-100123, May 11, 2022 Peer-reviewed

Misc.

109

珪藻の進化・繁栄の謎を握る未知の藻類:パルマ藻の生物学

桑田晃, 伴広輝, 中村洋路, 山田和正, 佐藤晋也, 吉川伸哉, 緒方博之, 一宮睦雄

日本海洋学会大会講演要旨集(Web), 2023, 2023
Purification of Medusavirus stheno histone-like protein H3-H4 and the comparison with sister strain by kinetic analysis of infected cells

Kobayashi M, Matsumura K, Masuda R, Ogata H, Takemura M

The 44th Annual Meeting of the Molecular Biology Society of Japa, Dec, 2022
ナノポアシークエンスによる巨大ウイルスゲノムの解析手法評価

The 44th Annual Meeting of the Molecular Biology Society of Japan, Dec, 2022
Translation Landscape of a giant virus.

Zhang R, Hikida H, Shichino Y, Mito M, Iwasaki S, Ogata H

Kyoto University Science Club Day 2022., Nov 21, 2022
異なる系統に属するミミウイルス間の相互作用解析

疋田弘之, 緒方博之

微生物生態学会第35回大会, Nov 2, 2022
Recurrent polar adaptations of giant viruses infecting eukaryotes

Meng L, Delmont T, Gaia M, Pelletier E, Fernàndez-Guerra A, Chaffron S, Wu J, Kaneko H, Endo H, Ogata H

35th JSME annual meeting, Nov 2, 2022
Characterization of sinking microeukaryote communities in spring Oyashio waters

Yang Q, Yang Y, Fukuda H, Okazaki Y, Nagata T, Ogata H, Endo H

35th JSME annual meeting, Nov 2, 2022
Horizontal and vertical profiling of plankton communities in the Eastern Indian Ocean

Liu W, Xia J, Hisashima F, Ogawa H, Ogata H, Endo H

35th JSME annual meeting, Nov 2, 2022
海洋植物プランクトンの共生的相互作用が増殖動態に与える影響

遠藤寿, 片岡剛文, 緒方博之

微生物生態学会第35回大会, Nov 2, 2022
MMETSPデータベースにおけるコンタミネーションの包括的解析

伴広輝, 岡崎友輔, 遠藤寿, 緒方博之

微生物生態学会第35回大会, Nov 2, 2022
Detection of horizontal gene transfers among giant viruses

Wu J, Meng L, Gaia M, Hikida H, Okazaki Y, Endo H, Ogata H

35th JSME annual meeting, Nov 2, 2022
Phylogenomic Analysis to Define the Taxonomic Classification of Medusaviruses Isolated in Japan

Zhang R, Takemura M, Murata K, Ogata H

35th JSME annual meeting, Nov 2, 2022
Spatio-temporal community genome dynamics of giant viruses in a deep lake uncovered by long-read metagenomics

Zhang L, Fang Y, Ogata H, Okazaki H

35th JSME annual meeting, Nov, 2022
Rapid characterization of novel giant viruses using nanopore sequencing

Hikida H, Okazaki Y, Zhang R, Ogata H

VoM 2022 Conference, Jul, 2022
Temperature-dependent distributions of giant viruses infecting Micromonas

Demory D, Endo H, Ogata H

Luncheon Seminar at the Department of Biological Sciences, the University of Bergen, Jun 16, 2022
Eco-evolutionary diversity of the global ocean microbiome across plankton size fraction.

Henry N, Galand P.E, Salazar G, Budinich M, Bachy C, Delage E, Câmara dos Reis M, Kaneko H, Gaudin M, Lombard F …

JOBIM2022, Jun 5, 2022
巨大ウイルスの一種メドゥーサウイルス : そのゲノムならびに粒子構造に関する特殊性—Medusavirus, One of Giant Viruses : Its Genome and Particle Structure

武村政春, 深谷将, 緒方博之, 村田和義

化学と生物 : 日本農芸化学会会誌 : 生命・食・環境 / 日本農芸化学会編, 60(6) 290-294, Jun, 2022
Viruses associated with the carbon export efficiency

Yang Q, Endo H, Ogata H

Greenocean workshop, May, 2022
MMETSP データベースにおけるコンタミネーション日本

伴広輝, 遠藤寿, 岡崎友輔, 緒方博之

藻類学会第 46 回大会, Mar, 2022
渦鞭毛Heterocapsa circularisquamaに感染するウイルスHcDNAVの単細胞トランスクリプトーム解析

高野義人, 櫻井哲也, 池田彩乃, 遠藤寿, 外丸裕司, 緒方博之, 長崎慶三

藻類, 70(1), 2022

Presentations

常識外れの巨大ウイルスの生態・進化

緒方博之

ウイルス学若手研究集会2023, Sep 29, 2023 Invited
ウイルス界への招待：ウイルスと私たち、ウイルスと地球環境

緒方博之

高槻中・高等学校授業, Sep 20, 2023 Invited
Genomic insights into the evolution and adaptation of large DNA viruses

Ogata H, Lingjie M, Junyi Wu

Confect Symposium 2023 – Marine Microbial Virus Ecology and Evolution, Aug 23, 2023 Invited
今まさに進化している「ウイルスの理解」

緒方博之

微生物コンソーシアム第8回全体会, Jul 18, 2023 Invited
海洋マイクロバイオーム全球生物データに基づく海洋システム学の開拓と次世代育成

緒方博之

海洋マイクロバイオームワークショップ, Jun 16, 2023
メタゲノム解析が明らかにする海洋巨大ウイルスの生態

緒方博之

望月研・緒方研合同ワークショップ, Jun 14, 2023
Giant viruses share their large gene pool via horizontal gene transfer

Ogata H

35th JSME annual meeting, Nov 3, 2022
The huge viral gene pool is shared among Nucleocytoviricota through HG

Ogata H

Luncheon Seminar at the Department of Biological Sciences, the University of Bergen, Jun 14, 2022 Invited
Prediction of eukaryotic plankton community based on remote sensing data

Ogata H

Tara Retreat, Jun 9, 2022 Invited
Viruses associated with the carbon export efficiency

Ogata H

Greenocean workshop, May 18, 2022
Viruses as part of Earth’s life system

Ogata H

The 12th Asian Symposium on Microbial Ecology (ASME2022), Apr 18, 2022 Invited
海洋ウイルスと地球環境

緒方博之

公開シンポジウム「生物多様性からみたワイルドサイエンス」, Feb 26, 2022 Invited
ウイルスは生命系・生態系に組み込まれた、切っても切り離せない、生き生きとした『部分』である

東京理科大学教養教育研究院主催「知のフロンティア：ウイルスの世紀を生きる第3回～ウイルスとはどういう存在で、人類はどう付き合っていくべきか？」, Feb 24, 2022 Invited
なんでもありのウイルス進化、だから難しい、だから面白い！

緒方博之

第六回微生物生態マラソンセミナー, Dec 15, 2021 Invited
Global genetic data reveal lineages of giant viruses and other eukaryotic viruses associated with the carbon export efficiency.

緒方博之

4th Ringberg Symposium on Giant Virus Biology, Nov 19, 2019 Invited
Eukaryotic giant viruses: update on their evolution, diversity and ecology.

Hiroyuki Ogata

ELSI Thermophiles seminar, Aug 30, 2019
Prediction of viruses enhancing the biological carbon pump.

Hiroyuki Ogata

Neo-Virology Informatics Workshop, Aug 29, 2019
Do viruses enhance the carbon export down to the deep ocean?

Hiroyuki Ogata

Gordon Research Conference, Jul 15, 2019
地球規模海洋オミクスデータに基づく巨大ウイルスと生物炭素ポンプの関係の解明

Hiroyuki Ogata

第2回感染症診断と治療におけるゲノム解析, Mar 15, 2019 Invited
A giant virus from a freshwater environment with a full set of histone genes

Hiroyuki Ogata

9th Aquatic Virus Workshop, Jun 17, 2018

Research Projects

Molecular ecological mechanism of bloom disintegration by viral infection

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Japan Society for the Promotion of Science, Apr, 2022 - Mar, 2027
Viral infection and its control mechanisms of marine plankton communities as revealed by dissolved ribosomal RNA

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2022 - Mar, 2026
Ecology of giant viruses inhabiting the aphotic zone of the sea

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (A), Japan Society for the Promotion of Science, Apr, 2022 - Mar, 2026
Virus-driven clockwork in lower tropic level marine ecosystem and its impact on the ocean

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (S), Japan Society for the Promotion of Science, Jul, 2021 - Mar, 2026
Aggregate-biosphere: Unveiling hidden regulatory processes in the oceanic carbon cycle

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (S), Japan Society for the Promotion of Science, Jun, 2019 - Mar, 2024
Study of giant virus ecology and virus-host interaction in aquatic environments

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2020 - Mar, 2023
Comprehensive understanding of the role of giant viruses in the aquatic microbial ecosystem

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2018 - Mar, 2022

Ogata Hiroyuki
Elucidation of mechanisms supporting infection and coexistence of host-virus systems in aquatic environments

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area), Japan Society for the Promotion of Science, Jun, 2016 - Mar, 2021

Nagasaki Keizo
Comprehensive, spatiotemporal study and applied research of carboxydotrophs

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (S), Japan Society for the Promotion of Science, May, 2016 - Mar, 2021

SAKO Yoshihiko
Foundation of virus oceanography based on comprehensive virome analysis

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2017 - Mar, 2020

Yoshida Takashi
Comparative Biology of Parmales and diatoms to explore the origin and sucess of diatoms

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Apr, 2017 - Mar, 2020

Kuwata Akira
Probability theory and statistics on a noncommutative topological monoid of strings and their application to bioremediation

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (B), Japan Society for the Promotion of Science, Jul, 2016 - Mar, 2019

Koyano Hitoshi
A holistic ecosystemic investigation of marine giruses, virophages and their eukaryotic hosts

Grants-in-Aid for Scientific Research, Grant-in-Aid for Scientific Research (C), Japan Society for the Promotion of Science, Apr, 2014 - Mar, 2017

Ogata Hiroyuki

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