菊地武司 (Takeshi Kikuchi) - マイポータル

基本情報

所属: 立命館大学生命科学部生命情報学科教授
: (兼任)総合科学技術研究機構創薬科学研究センター
: (兼任)生命科学研究科

学位: 博士（理学）(大阪市立大学)

J-GLOBAL ID: 200901016783858837
researchmap会員ID: 1000243026

研究キーワード

計算化学, 生物物理学, 情報生物学

研究分野

ライフサイエンス / 生物物理学 /

論文

Engineering the substrate specificity of Alcaligenes D-aminoacylase useful for the production of D-amino acids by optical resolution

Shigekazu Yano, Hiroyuki Haruta, Takuya Ikeda, Takeshi Kikuchi, Masahiro Murakami, Mitsuaki Moriguchi, Mamoru Wakayama

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 879(29) 3247-3252 2011年11月
Prediction of protein folding properties with analyses of inter-residue average distance statistics

Takeshi Kikuchi

Peptide & Protein Letters 18 979-990 2011年
Analysis of the Local Sequences of Folding Sites in β Sandwich Proteins with Inter-Residue Average Distance Statistics

Yuko Ishizuka, Takeshi Kikuchi

The Open Bioinformatics Journal 5 59-68 2011年
In silico study on the substrate binding manner in human myo-inositol monophosphatase 2

Seisuke Fujita, Tetsuo Ohnishi, Shujiro Okuda, Ryo Kobayashi, Satoshi Fukuno, Daisuke Furuta, Takeshi Kikuchi, Takeo Yoshikawa, Norihisa Fujita

Journal of molecular modeling 17 2559–2567 2011年
Analyses of Protein Sequences Using Inter-Residue Average Distance Statistics to Study Folding Processes and the Significance of Their Partial Sequences

Yosuke Kawai, Masanari Matsuoka, Takeshi Kikuchi

Peptide & Protein Letters 18 979-990 2011年
Absence of Binding between the Human Transferrin Receptor and the Transferrin Complex of Biological Toxic Trace Element, Aluminum, Because of an Incomplete Open/Closed Form of the Complex

Tetsuya Sakajiri, Takaki Yamamura, Takeshi Kikuchi, Kaoru Ichimura, Takako Sawada, Hirofumi Yajima

Biological Trace Element Research (136) 279-286 2010年
Estimation of Relative Binding Free Energy Based on a Free Energy Variational Principle for Quantitative Structure Activity Relationship Analyses

Yuichi Shine, Takeshi Kikuchi

Chemycal Physics (365) 53-59 2009年
Spin correlations in a no frustrated one-dimensional spin system and the formation of the ground state as a model of protein folding

Takeshi Kikuchi

Physica A: Statistical Mechanics and its Applications (388) 129 2009年
Analysis of 3D structural differences in the IgG-binding domains based on the interresidue average-distance statistics

Takeshi Kikuchi

Amino Acids 5 541-549 2008年
Analysis of the differences in the folding mechanisms of c-type lysozymes based on contact maps constructed with interresidue average distances

Shunsuke Nakajima, Takeshi Kikuchi

Journal of Molecular Modeling 13 587-594 2007年
Molecular Dynamics Approach to Study the Discrepancies in the Thermal Behavior of Amylose and Chitosan Conformations

Tetsuya Sakajiri, Takeshi Kikuchi, Istvan Simon, Katsumi Uchida, TakakiYamamura, Tadahiro Ishii, Hirofumi Yajima

Journal of Molecular Structure THEOCHEM 764 133-140 2006年
Prediction of Folding Pathway and Kinetics Among Plant Hemoglobins by Using an Average Distance Map Method

Shunsuke Nakajima, Emma &Aacute, lvarez-Salgado, Takeshi Kikuchi, Ra&uacute, l Arredondo-Peter

Proteins: Structure, Function and Bioinformatics 61 500-506 2005年
Detection of Pairwise Residue Proximity by Covariation Analysis for 3D-Structure Prediction of G-Protein-Coupled Receptors

Wataru Nemoto, Takashi Imai, Takuya Takahashi, Takeshi Kikuchi, Norihisa Fujita

The Protein Journal 23 427-435 2004年
Analysis of the Differences of the Folding Kinetics of Structurally Homologous Proteins based on the Predictions of the Gross feature of the Residue Contacts

Takehiro Ichimaru, Takeshi Kikuchi

Proteins: Structure, Function and Genetics 51, 515-530 2003年
V Nucleotide Binding Sites in V-type Na+-ATPase from Enterococcus hirae

T. Murata, Y. Yoshikawa, T. Hosaka, K. Takase, Y. Kakimura, I. Yamato

Journal of Biochemistry 132, 789-794 2002年
Contact maps derived from the statistics of average distances between residues in proteins. Application to the prediction of structures and active sites of proteins and peptides.

Takeshi Kikuchi

Recent Research Developments in Protein Engineering (Research Signpost, India)2 1-48 2000年

書籍等出版物

Analysis of sequences of (β/α) barrel proteins based on the inter-residue average distance statistics to elucidate folding processes

Masanari Matsuoka, Michirou Kabata, Yosuke Kawai, Takeshi Kikuchi

"Biochemistry / Book 2", Deniz Ekinci(Ed.) InTech Open Access Publisher Inc 2012年 (ISBN: 9799533077849)
Decoding Amino Acid Sequences of Proteins using Inter-Residue Average Distance Statistics to Extract Information on Protein Folding Mechanisms

Takeshi Kikuchi

"Protein Folding", Eric C. Walters (Ed.), Nova Science Publishers Inc., New York 2011年 (ISBN: 9781617289903)

講演・口頭発表等

Prediction of protein folding properties with analyses of inter-residue average distance statistics

Proceedings of BIT's 4th Annual Protein and Peptide Conference (Pepcon-2011) 2011年3月
Relative Binding Free energy Estimation Between a protein and a ligand Based on the Free Energy Binding Principle

BIT's Annual International Conference of Medchem-2010 2010年5月
Prediction of Protein Folding Properties Based on Interresidue Average Distance Statistics

International Conference of Amino acid and Porteins held at Trssalloniki, Greece August. Proceeding: Amino Acids (33) 2007年

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菊地武司

基本情報

研究キーワード

研究分野

論文

書籍等出版物

講演・口頭発表等

担当経験のある科目(授業)

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