Akifumi Yamashita - My portal

Profile Information

Degree: Ph. D. Osaka Univ., 2009 Science(Osaka University)

J-GLOBAL ID: 201001007522665103
researchmap Member ID: 6000022575

External link: http://db.tohoku.ac.jp/whois/detail/0e4cac50c55829de9a432c475f36f6d1.html

Research Interests

Research History

Assistant Professor, Tohoku University Graduate School of Life Sciences

Misc.

Highly conserved sequences for human neutralization epitope on hemagglutinin of influenza A viruses H3N2, H1N1 and H5N1: Implication for human monoclonal antibody recognition

Akifumi Yamashita, Norihito Kawashita, Ritsuko Kubota-Koketsu, Yuji Inoue, Yohei Watanabe, Madiha S. Ibrahim, Shoji Ideno, Mikihiro Yunoki, Yoshinobu Okuno, Tatsuya Takagi …

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 393(4) 614-618, Mar, 2010
Highly conserved sequences for human neutralization epitope on hemagglutinin of influenza A viruses H3N2, H1N1 and H5N1: Implication for human monoclonal antibody recognition

Akifumi Yamashita, Norihito Kawashita, Ritsuko Kubota-Koketsu, Yuji Inoue, Yohei Watanabe, Madiha S. Ibrahim, Shoji Ideno, Mikihiro Yunoki, Yoshinobu Okuno, Tatsuya Takagi …

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 393(4) 614-618, Mar, 2010
Full-Length Sequences of One Genotype 4 and Three Genotype 3 Hepatitis E Viruses in Fecal Samples from Domestic Swine in Japan.

Takeru Urayama, Sompong Sapsutthipas, Muneo Tsujikawa, Akifumi Yamashita, Hiromi Nishigaki, Madiha S. Ibrahim, Katsuro Hagiwara, Mikihiro Yunoki, Teruo Yasunaga, Teruhide Yamaguchi …

The Open Veterinary Science Journal, 4 11-19, 2010
Full-Length Sequences of One Genotype 4 and Three Genotype 3 Hepatitis E Viruses in Fecal Samples from Domestic Swine in Japan.

Takeru Urayama, Sompong Sapsutthipas, Muneo Tsujikawa, Akifumi Yamashita, Hiromi Nishigaki, Madiha S. Ibrahim, Katsuro Hagiwara, Mikihiro Yunoki, Teruo Yasunaga, Teruhide Yamaguchi …

The Open Veterinary Science Journal, 4 11-19, 2010
Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

Shota Nakamura, Cheng-Song Yang, Naomi Sakon, Mayo Ueda, Takahiro Tougan, Akifumi Yamashita, Naohisa Goto, Kazuo Takahashi, Teruo Yasunaga, Kazuyoshi Ikuta …

PLOS ONE, 4(1) e4219-, Jan, 2009
Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach

Shota Nakamura, Cheng-Song Yang, Naomi Sakon, Mayo Ueda, Takahiro Tougan, Akifumi Yamashita, Naohisa Goto, Kazuo Takahashi, Teruo Yasunaga, Kazuyoshi Ikuta …

PLOS ONE, 4(1) e4219-, Jan, 2009
Computational search for over-represented 8-mers within the 5 '-regulatory regions of 634 mouse testis-specific genes

Akifumi Yamashita, Naohisa Goto, Seiji Nishiguchi, Kazunori Shimada, Hiromichi Yamanishi, Teruo Yasunaga

GENE, 427(1-2) 93-98, Dec, 2008
Computational search for over-represented 8-mers within the 5 '-regulatory regions of 634 mouse testis-specific genes

Akifumi Yamashita, Naohisa Goto, Seiji Nishiguchi, Kazunori Shimada, Hiromichi Yamanishi, Teruo Yasunaga

GENE, 427(1-2) 93-98, Dec, 2008
In silico study of a novel gene evolved from an ancestral SVIP gene and highly expressed in the adult mouse testes

Momoko Yoshida, Akifumi Yamashita, Yoshiko Idoji, Seiji Nishiguchi, Kazunori Shimada, Teruo Yasunaga, Hiromichi Yamanishi

INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 22(2) 143-148, Aug, 2008
In silico study of a novel gene evolved from an ancestral SVIP gene and highly expressed in the adult mouse testes

Momoko Yoshida, Akifumi Yamashita, Yoshiko Idoji, Seiji Nishiguchi, Kazunori Shimada, Teruo Yasunaga, Hiromichi Yamanishi

INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 22(2) 143-148, Aug, 2008
In silico study of whey-acidic-protein domain containing oral protease inhibitors.

Idoji Y, Watanabe Y, Yamashita A, Yamanishi K, Nishiguchi S, Shimada K, Yasunaga T, Yamanishi H

Int. J. Mol. Med., 21 461-468, 2008
In silico study of whey-acidic-protein domain containing oral protease inhibitors.

Idoji Y, Watanabe Y, Yamashita A, Yamanishi K, Nishiguchi S, Shimada K, Yasunaga T, Yamanishi H

Int. J. Mol. Med., 21 461-468, 2008
Conservation of Nested genes in Eukaryote.

Shibasaki T, Yamashita A, Goto N, Shota N, Yasunaga T

The proceedings of the 2007 annual conference of the Japanese society for bioinformatics, 2007
Analysis of HERV-K replication mechanism in the human genome.

Kashiwada R, Yamashita A, Goto N, Shota N, Yasunaga T

The proceedings of the 2007 annual conference of the Japanese society for bioinformatics, 2007
Conservation of Nested genes in Eukaryote.

Shibasaki T, Yamashita A, Goto N, Shota N, Yasunaga T

The proceedings of the 2007 annual conference of the Japanese society for bioinformatics, 2007
Analysis of HERV-K replication mechanism in the human genome.

Kashiwada R, Yamashita A, Goto N, Shota N, Yasunaga T

The proceedings of the 2007 annual conference of the Japanese society for bioinformatics, 2007
Mapping Database of cDNA and Genome Designed to Use for Various Applications

Yamashita Akifumi, Kurokawa Ken, Yasunaga Teruo

GI, 14 418-419, 2003
Mapping Database of cDNA and Genome Designed to Use for Various Applications.

Ken Kurokawa, Teruo Yasunaga

Genome Informatics, 14 418-419, 2003

Presentations

Human neutralization epitope on hemagglutinin of influenza A viruses H3N2, H1N1 and H5N1: A possible target for alternative vaccine development

International Joint Forum on Infectious Diseases, 2009
抗H3N2ヒト型単クローン中和抗体が認識するエピトープ領域の保存性

第57回日本ウイルス学会学術集会, 2009
Detection of Tissue-Specific Genes and Computational Analysis of Testis-Specific Gene Expression Regulatory Regions.

The 20th International Conference on Genome Informatics, 2009
Human neutralization epitope on hemagglutinin of influenza A viruses H3N2, H1N1 and H5N1: A possible target for alternative vaccine development

International Joint Forum on Infectious Diseases, 2009
抗H3N2ヒト型単クローン中和抗体が認識するエピトープ領域の保存性

第57回日本ウイルス学会学術集会, 2009
Detection of Tissue-Specific Genes and Computational Analysis of Testis-Specific Gene Expression Regulatory Regions.

The 20th International Conference on Genome Informatics, 2009
Mapping Database of cDNA and Genome Designed to Use for Various Applications

The 14th International Conference on Genome Informatics, 2003
Mapping Database of cDNA and Genome Designed to Use for Various Applications

The 14th International Conference on Genome Informatics, 2003

Professional Memberships

Research Projects

メタゲノム情報解析

共同研究, 2009 - 2011
Analysis of metagenome data

Cooperative Research, 2009 - 2011
遺伝子情報解析

2006 - 2008
DNAまたはペプチドのコンピュータを使った配列解析
In silico analysis of DNA and/or protein sequence.